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Thermus thermophilus HB27 (tthe0)
Gene : AAS80697.1
DDBJ      :             N utilization substance protein A
Swiss-Prot:NUSA_THET8   RecName: Full=Transcription elongation protein nusA;

Homologs  Archaea  1/68 : Bacteria  909/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.202.1d.52.3
:387 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->346 1hh2P PDBj 3e-71 47.2 %
:RPS:PDB   80->142 2coiB PDBj 1e-07 9.7 %
:RPS:PDB   133->285 2a1aA PDBj 1e-20 12.1 %
:RPS:PDB   259->349 2cxcA PDBj 2e-21 27.8 %
:RPS:SCOP  1->135 1hh2P4  d.202.1.1 * 3e-27 32.8 %
:RPS:SCOP  142->209 1k0rA1  b.40.4.5 * 1e-18 36.8 %
:RPS:SCOP  221->287 1hh2P2  d.52.3.1 * 3e-19 65.7 %
:RPS:SCOP  289->349 1hh2P3  d.52.3.1 * 3e-09 60.7 %
:HMM:SCOP  1->136 1hh2P4 d.202.1.1 * 5.1e-33 43.7 %
:HMM:SCOP  141->209 1k0rA1 b.40.4.5 * 7.9e-21 55.1 %
:HMM:SCOP  210->287 1hh2P2 d.52.3.1 * 8.7e-31 61.5 %
:HMM:SCOP  289->352 1k0rA3 d.52.3.1 * 7.3e-15 43.8 %
:RPS:PFM   4->133 PF08529 * NusA_N 5e-14 37.5 %
:RPS:PFM   143->205 PF00575 * S1 4e-05 46.8 %
:HMM:PFM   4->135 PF08529 * NusA_N 1.4e-40 45.9 122/122  
:HMM:PFM   141->206 PF00575 * S1 1.3e-16 40.0 65/74  
:HMM:PFM   315->355 PF00013 * KH_1 1.4e-05 34.1 41/57  
:HMM:PFM   260->291 PF07650 * KH_2 7.7e-05 29.0 31/59  
:BLT:SWISS 1->357 NUSA_THET8 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS80697.1 GT:GENE AAS80697.1 GT:PRODUCT N utilization substance protein A GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(334862..336025) GB:FROM 334862 GB:TO 336025 GB:DIRECTION - GB:PRODUCT N utilization substance protein A GB:PROTEIN_ID AAS80697.1 GB:DB_XREF GI:46196280 LENGTH 387 SQ:AASEQ MNREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYIDPNSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDLRQILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPRSEQIPTEKYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPGRRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPAQVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAEISDLDEALRRAAEEEAEARERKAREEFEKLFRDLG GT:EXON 1|1-387:0| SW:ID NUSA_THET8 SW:DE RecName: Full=Transcription elongation protein nusA; SW:GN Name=nusA; OrderedLocusNames=TTHA0701; SW:KW Complete proteome; RNA-binding; Transcription;Transcription antitermination; Transcription regulation;Transcription termination. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->357|NUSA_THET8|0.0|100.0|357/387| GO:SWS:NREP 5 GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0031564|"GO:transcription antitermination"|Transcription antitermination| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0006353|"GO:transcription termination"|Transcription termination| SEG 65->79|riemvevrrvvekve| SEG 211->220|hekllehllk| SEG 358->384|ealrraaeeeaearerkareefeklfr| BL:PDB:NREP 1 BL:PDB:REP 1->346|1hh2P|3e-71|47.2|335/344| RP:PDB:NREP 3 RP:PDB:REP 80->142|2coiB|1e-07|9.7|62/356| RP:PDB:REP 133->285|2a1aA|1e-20|12.1|149/161| RP:PDB:REP 259->349|2cxcA|2e-21|27.8|90/138| RP:PFM:NREP 2 RP:PFM:REP 4->133|PF08529|5e-14|37.5|120/122|NusA_N| RP:PFM:REP 143->205|PF00575|4e-05|46.8|62/74|S1| HM:PFM:NREP 4 HM:PFM:REP 4->135|PF08529|1.4e-40|45.9|122/122|NusA_N| HM:PFM:REP 141->206|PF00575|1.3e-16|40.0|65/74|S1| HM:PFM:REP 315->355|PF00013|1.4e-05|34.1|41/57|KH_1| HM:PFM:REP 260->291|PF07650|7.7e-05|29.0|31/59|KH_2| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 4 RP:SCP:REP 1->135|1hh2P4|3e-27|32.8|125/126|d.202.1.1| RP:SCP:REP 142->209|1k0rA1|1e-18|36.8|68/76|b.40.4.5| RP:SCP:REP 221->287|1hh2P2|3e-19|65.7|67/78|d.52.3.1| RP:SCP:REP 289->349|1hh2P3|3e-09|60.7|61/68|d.52.3.1| HM:SCP:REP 1->136|1hh2P4|5.1e-33|43.7|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 141->209|1k0rA1|7.9e-21|55.1|69/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 210->287|1hh2P2|8.7e-31|61.5|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 289->352|1k0rA3|7.3e-15|43.8|64/67|d.52.3.1|2/2|Prokaryotic type KH domain (KH-domain type II)| OP:NHOMO 917 OP:NHOMOORG 916 OP:PATTERN -----------------------------------------------------1-------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1-111---------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 345 STR:RPRED 89.1 SQ:SECSTR ccccccccTTTTcccccccHHHHHHHHHHHHHHHHHTcc########TTcccccEEEEcccTTcccEEEEEEEEEccccccHHHHTTcHHHHHHccGGGTcEEEccTTcccTTEEEETTEEEEcccEEEEcccccccccccccTTcEEEEEEEEEcccEHEEEEETTTTTTTTcEEEEEcccccTTcEEEEEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTHHHHHHHHHHHHcGGGHHHHHHHHHHcccEEEEEEccccHHHHHHHHcTTccEEEEEEEEEEEEEEEEEcTTTHHHHHcGGGHHHHHHHHHHHHHHcEEEEEE################################## DISOP:02AL 363-364| PSIPRED ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEccEEEEEcHHHcccccccccccEEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHcccHHHccEEEEEEEEcccccccEEEEEEccccccEEEEEEccccHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEEEEcccccEEEEEEccccccEEEccccccHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //