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Thermus thermophilus HB27 (tthe0)
Gene : AAS80809.1
DDBJ      :             DNA polymerase III epsilon chain-like protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  450/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.55.3d.110.3
:624 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   440->603 2p1jB PDBj 2e-17 36.4 %
:RPS:PDB   136->173 3c2wF PDBj 2e-04 23.7 %
:RPS:PDB   440->623 3cg7A PDBj 3e-21 15.8 %
:RPS:SCOP  136->173 1s66L  d.110.3.2 * 3e-04 34.2 %
:RPS:SCOP  440->607 1wljA  c.55.3.5 * 7e-29 20.1 %
:HMM:SCOP  137->173 1mzuA_ d.110.3.1 * 9.3e-05 37.8 %
:HMM:SCOP  431->619 1y97A1 c.55.3.5 * 5.1e-51 46.6 %
:RPS:PFM   444->591 PF00929 * Exonuc_X-T 1e-15 41.9 %
:HMM:PFM   441->592 PF00929 * Exonuc_X-T 3.4e-33 38.2 152/165  
:HMM:PFM   139->173 PF00989 * PAS 3.4e-05 40.0 35/113  
:HMM:PFM   247->285 PF00512 * HisKA 0.00035 30.8 39/68  
:HMM:PFM   9->138 PF04156 * IncA 0.00062 37.7 77/191  
:BLT:SWISS 430->616 DPO3E_RHOCA 2e-29 41.2 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS80809.1 GT:GENE AAS80809.1 GT:PRODUCT DNA polymerase III epsilon chain-like protein GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(447153..449027) GB:FROM 447153 GB:TO 449027 GB:DIRECTION - GB:PRODUCT DNA polymerase III epsilon chain-like protein GB:PROTEIN_ID AAS80809.1 GB:DB_XREF GI:46196392 LENGTH 624 SQ:AASEQ MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGALSLLLYPPFLGYLALTRALGQESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLEQRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGLVLLYNPKARALLGEGLGVGKSLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLHRLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLRLLAGRLEARLALTPGWALDPEAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLFRLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPARKAPPEALKEAPAPRALVYDLTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGLDQPPLLDTLLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLFERGLKRLWDVVEACRRLPLARLRY GT:EXON 1|1-624:0| BL:SWS:NREP 1 BL:SWS:REP 430->616|DPO3E_RHOCA|2e-29|41.2|187/704| COIL:NAA 77 COIL:NSEG 2 COIL:REGION 101->148| COIL:REGION 258->286| TM:NTM 2 TM:REGION 7->29| TM:REGION 49->71| SEG 3->29|alrflgalllglllvagslalglflll| SEG 50->75|plftgllllgalslllyppflgylal| SEG 111->131|rlaeekerleqrleeeaaqak| SEG 182->192|lfglldrslll| SEG 217->234|aleegflllleealpegp| SEG 294->312|laqdllrllagrlearlal| SEG 396->417|lllparkappealkeapapral| SEG 456->467|avvalagvhvlg| SEG 540->559|ldqpplldtlllaqllfpdl| BL:PDB:NREP 1 BL:PDB:REP 440->603|2p1jB|2e-17|36.4|162/171| RP:PDB:NREP 2 RP:PDB:REP 136->173|3c2wF|2e-04|23.7|38/469| RP:PDB:REP 440->623|3cg7A|3e-21|15.8|184/296| RP:PFM:NREP 1 RP:PFM:REP 444->591|PF00929|1e-15|41.9|148/163|Exonuc_X-T| HM:PFM:NREP 4 HM:PFM:REP 441->592|PF00929|3.4e-33|38.2|152/165|Exonuc_X-T| HM:PFM:REP 139->173|PF00989|3.4e-05|40.0|35/113|PAS| HM:PFM:REP 247->285|PF00512|0.00035|30.8|39/68|HisKA| HM:PFM:REP 9->138|PF04156|0.00062|37.7|77/191|IncA| RP:SCP:NREP 2 RP:SCP:REP 136->173|1s66L|3e-04|34.2|38/119|d.110.3.2| RP:SCP:REP 440->607|1wljA|7e-29|20.1|164/168|c.55.3.5| HM:SCP:REP 137->173|1mzuA_|9.3e-05|37.8|37/0|d.110.3.1|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 431->619|1y97A1|5.1e-51|46.6|189/0|c.55.3.5|1/1|Ribonuclease H-like| OP:NHOMO 531 OP:NHOMOORG 451 OP:PATTERN -------------------------------------------------------------------- --------------11111-12--1111111--222111111111111------------11111111----111-------111111------------1111-1--1-1111111111111111--111----221111---12-------------------------------------21122---4112222222222222221211112221111-1211111122111111111111111111111-1--------11----1-11--11111111111111111111111111111111111111111111111-1111111111111111111111221112-11311-1--1-21111--11------------1-1111111111111111111111-112121112-1-1----------112-112-3222221111111111-11112111111-111111111111111111111111-1111-11111111111111111111111111111212211--12-1----12--113111111-------1122321-----11-1--------111---1-11-----------------------------11---1111111--1112------1---1-----1-321--------------------------------------------------------------------------------------------------111111111--1-----------------------1-------11----1-----------------------------------------------------------111111----------------------2222222212--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 327 STR:RPRED 52.4 SQ:SECSTR ###################################################################################################################################cccGTcccTTcccEEcTTEEEEEEcTTcccccEETTHHHHcc######################################################################################################################################################################EEEEEETTEEEEEEEcTTcEEEEEccccEEEEccccccccEEETTccEEEEEEcccHHHHHHHHHHHHTcccccccHHHEEEEEEEEETTTccccGGGccEEEEEEEEcccTTcccccccEEEEEEEETEEEEEEEEEEEccccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHHHTTcEEEEEcccHHHHTHHHHEEEHHHHHHHHHHHHcccccccccHHHHHHHHTTccccccTcHHHHHHHHHHHHHHHHHTTccccccEEEEcccGGGcccccccTc DISOP:02AL 1-2, 125-133, 394-410| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccEEEEcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHcccccEEEEHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHHHcccHHHHEEccccHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEccEEEccccEEEEEcccccccHHHHHcccccHHHHHccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccc //