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Thermus thermophilus HB27 (tthe0)
Gene : AAS80827.1
DDBJ      :             tRNA nucleotidyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  255/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.173.1c.107.1d.218.1d.37.1
:815 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   456->594 3h38A PDBj 1e-23 44.9 %
:RPS:PDB   4->211 2eb0A PDBj 1e-11 15.7 %
:RPS:PDB   306->420 2ef7B PDBj 2e-11 18.7 %
:RPS:PDB   463->593 3bjdC PDBj 6e-08 10.6 %
:RPS:SCOP  4->173 1k23D  c.107.1.1 * 5e-09 22.0 %
:RPS:SCOP  301->420 2rifA1  d.37.1.1 * 9e-14 17.9 %
:RPS:SCOP  437->579 1ou5A2  d.218.1.4 * 2e-20 26.2 %
:HMM:SCOP  4->296 1k23A_ c.107.1.1 * 5.4e-47 35.0 %
:HMM:SCOP  304->357 1nf7A2 d.37.1.1 * 2e-05 38.9 %
:HMM:SCOP  425->579 1ou5A2 d.218.1.4 * 2e-28 39.7 %
:HMM:SCOP  580->808 1miwA1 a.173.1.1 * 6.7e-24 33.3 %
:RPS:PFM   456->582 PF01743 * PolyA_pol 1e-13 47.0 %
:HMM:PFM   456->582 PF01743 * PolyA_pol 1.3e-24 37.1 124/126  
:HMM:PFM   303->358 PF00571 * CBS 1.4e-08 42.3 52/57  
:HMM:PFM   373->420 PF00571 * CBS 0.00052 38.6 44/57  
:HMM:PFM   3->140 PF01368 * DHH 2.2e-07 23.3 103/117  
:HMM:PFM   248->290 PF02272 * DHHA1 1.9e-05 42.9 42/68  
:BLT:SWISS 113->211 RL9_AYWBP 2e-06 32.7 %
:BLT:SWISS 457->593 CCA_XYLFM 2e-14 39.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS80827.1 GT:GENE AAS80827.1 GT:PRODUCT tRNA nucleotidyltransferase GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 467136..469583 GB:FROM 467136 GB:TO 469583 GB:DIRECTION + GB:PRODUCT tRNA nucleotidyltransferase GB:PROTEIN_ID AAS80827.1 GB:DB_XREF GI:46196410 LENGTH 815 SQ:AASEQ MAAHENLDFDALGSMVLAGRLYPGSALALVGGVEGVLREVLPLLEDRLDLVPASEIPLDRVREVVLVDNARPERLGPLAALVGRVPFLVYDHHPRTPGDVPAVGGRVAPVGATVSLLVPLLLERGVALDPLEATLAYAGLWEDTGGFSFPSTTPEDLEAAGHLLRQGAEVARVRDWVRPRFGEEAREILSQLLKTAHLVERKGFRLLVARAREKGYVPALAPLAHTLLDLYEADGVLLALRLGGDTLLIARSKARLDVGRWLGALGGGGHARAAFARVRGKGRALARLLETLEAFLDPEPTLGQAMTAPVETLRPTSVREALRQLEERGYGAMPVVEPLGEGVRVLGLARRRDLRKAVRLGFGDHPVEGFLARAVVLPPSTPLSQVEPRLREAGGRVLVGERAGEGWRLLGIYTRTDLYRSAPKPEPTLAERVLKALPSGVLRVVEALREAFPEGIYLVGGAVRDALLGRSGPDLDLAVGPGVEVARVAQFLVDRFGGSYGLHYAFGTARVRLPFGLVVDLAESREEVYPYPGALPQVRRAPIARDLERRDYSVNAMAVDLGGLAFLDPYGGLRDLEARLLRPLHPLAFVEDPTRVVRGARLAARLGFRFAEEVPRLLAPALLPEVVAGASRSRLREELLLTLEEEAFYRALALLAELGALKALYGLDLPPEAPFLRLRAEEGLSEARLLLLLFHQKDPLERAAWLALPGRLREGLALLLAASRGEEVPKEALGREPLRAAFLALFPEKEAWLKAERRVLMGRDLLKLGLKPGPKVGEILRRVAEARRRGEVRSFEEELALARKLLGDGTLALPE GT:EXON 1|1-815:0| BL:SWS:NREP 2 BL:SWS:REP 113->211|RL9_AYWBP|2e-06|32.7|98/849| BL:SWS:REP 457->593|CCA_XYLFM|2e-14|39.5|129/416| SEG 27->45|lalvggvegvlrevlplle| SEG 97->112|pgdvpavggrvapvga| SEG 237->248|llalrlggdtll| SEG 259->280|grwlgalggggharaafarvrg| SEG 283->296|ralarlletleafl| SEG 595->628|rvvrgarlaarlgfrfaeevprllapallpevva| SEG 634->646|rlreellltleee| SEG 651->667|alallaelgalkalygl| SEG 676->693|lrlraeeglsearlllll| SEG 706->727|lalpgrlreglalllaasrgee| SEG 765->775|llklglkpgpk| SEG 781->793|rrvaearrrgevr| BL:PDB:NREP 1 BL:PDB:REP 456->594|3h38A|1e-23|44.9|136/424| RP:PDB:NREP 3 RP:PDB:REP 4->211|2eb0A|1e-11|15.7|198/304| RP:PDB:REP 306->420|2ef7B|2e-11|18.7|107/120| RP:PDB:REP 463->593|3bjdC|6e-08|10.6|123/320| RP:PFM:NREP 1 RP:PFM:REP 456->582|PF01743|1e-13|47.0|117/123|PolyA_pol| HM:PFM:NREP 5 HM:PFM:REP 456->582|PF01743|1.3e-24|37.1|124/126|PolyA_pol| HM:PFM:REP 303->358|PF00571|1.4e-08|42.3|52/57|CBS| HM:PFM:REP 373->420|PF00571|0.00052|38.6|44/57|CBS| HM:PFM:REP 3->140|PF01368|2.2e-07|23.3|103/117|DHH| HM:PFM:REP 248->290|PF02272|1.9e-05|42.9|42/68|DHHA1| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF01743|IPR002646| GO:PFM GO:0006396|"GO:RNA processing"|PF01743|IPR002646| GO:PFM GO:0016779|"GO:nucleotidyltransferase activity"|PF01743|IPR002646| RP:SCP:NREP 3 RP:SCP:REP 4->173|1k23D|5e-09|22.0|164/231|c.107.1.1| RP:SCP:REP 301->420|2rifA1|9e-14|17.9|117/131|d.37.1.1| RP:SCP:REP 437->579|1ou5A2|2e-20|26.2|126/140|d.218.1.4| HM:SCP:REP 4->296|1k23A_|5.4e-47|35.0|283/307|c.107.1.1|1/1|DHH phosphoesterases| HM:SCP:REP 304->357|1nf7A2|2e-05|38.9|54/0|d.37.1.1|1/2|CBS-domain| HM:SCP:REP 425->579|1ou5A2|2e-28|39.7|151/152|d.218.1.4|1/1|Nucleotidyltransferase| HM:SCP:REP 580->808|1miwA1|6.7e-24|33.3|222/265|a.173.1.1|1/1|Poly A polymerase C-terminal region-like| OP:NHOMO 296 OP:NHOMOORG 263 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11--1111111-111111111-1-1111111-111111---11111111111111-11--1-111111111111111--11111111111-----------------11-11111--11121111-111-11221122211121111222111-11111111111111111------------------11----------1------------------------------------------------------------1-----------------------------------------2-1---------1---111-----1--1--111121112121112-1---1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------122321111121111122121122-----112------------------------122-1---------------------------------1--------1-1---------------------------------1-1-----111-1111111111-1--------------------------------111--------------------------1------------------1-----------------------------1-1--1111111----------------------------------------------1111111111--- ------------1-------------------------------------------1-----------------------------------------------------------------------------------------------------1--------------1----15-------------1----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 513 STR:RPRED 62.9 SQ:SECSTR ###cccccHHHHHHHHHHHHHHcEEEETcEEEEcccccHHHHHHHHHHTccccEEccccTTcEEEEEccccGGGccTTGGGcEEEcEEEEEccccccccccccEEEEcccccHHHHHHHHHHTTcGGGcHHHHHHHHHHHHHHHTTTTcTTccHHHHHHHHHHHHHHTcccHHHHHHHccHHHHHHHGGGGccHHHHHTTcEEEEEETTEEHTTccTTTTTTGGGGGGGcTTcccEEEEEEccccEEEEEEEc############################################HccccGGGTEEcccEEETccHHHHHHHHHHHTccEEEEEcTTcccccEEEEEEHHHHHHHHHTTccTTccGGGTEEcccEETTccHHHHHHHHHTTccEEEEEcTTcTTccEEEEEEHHHHHHE##################################EEEETHHcTTHHHTcccHHHHHHHHHTcTTccHHHHHHTcHHHHHHHHHHHHHHHHcccGGGHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcGGGcGGHHHHHTTTcccHHHHHHHcccTTHHHHHHT############################################################################################################################################################################################################################# DISOP:02AL 810-815| PSIPRED ccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccccccccccccEEEEEEcccHHHcccHHHHHccccEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHccEEEEccEEEEEEEEccHHHccccHHHHHHHHHHHcccEEEEEEEEEccEEEEEEEEccccHHHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHEEccccEEcccccHHHHHHHHHHccccEEEEEcccccccEEEEEEEHHHHHHHHHcccccccHHHHccccEEEcccccHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccccEEEccEEEEEEEEEccccEEEEEcccccccccccEEEEcccccHHHHHHHccccEEEEEEcccccEEEcccHHHHHHHcccEEEccHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccc //