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Thermus thermophilus HB27 (tthe0)
Gene : AAS80938.1
DDBJ      :             hypothetical conserved protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  7/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.4.6
:498 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   415->474 2ao9C PDBj 4e-05 20.0 %
:RPS:SCOP  420->487 1yioA1  a.4.6.2 * 3e-06 16.2 %
:HMM:SCOP  432->475 1ixcA1 a.4.5.37 * 0.00035 29.5 %
:RPS:PFM   26->88 PF05158 * RNA_pol_Rpc34 9e-04 38.3 %
:HMM:PFM   435->475 PF00126 * HTH_1 6.3e-07 26.8 41/60  
:BLT:SWISS 434->475 Y2266_MYCBO 1e-06 47.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS80938.1 GT:GENE AAS80938.1 GT:PRODUCT hypothetical conserved protein GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(572313..573809) GB:FROM 572313 GB:TO 573809 GB:DIRECTION - GB:PRODUCT hypothetical conserved protein GB:PROTEIN_ID AAS80938.1 GB:DB_XREF GI:46196522 LENGTH 498 SQ:AASEQ MRGRAAGGNRRLRQKRGKICLFVQNLPPPHPLGAVVSWKTTMKEGNFVPKDTSFDALVGGLGLEVLRPSARPVLYLLPAPRPLLSPEGALLLFRPQEGLYRYRNAAGFLLPEPDPELLAFAEREGLGFALYPPWLKRESLERALALRLFALAPGMALAGLLDLFLKLPERALLEVLHQATGLALAHVAPWGEVLGFAGPVPARHPKEPGTGRGWVALEAGEGLLVAYGEEEDLLRAWGLLEVAARLLRLRARERSVERMQEETLGGALLEGLILGEADPERLFAFGFVEGVEWVLALVEPPAVLGRHRLAEERRREATLELRRRVGAYLDRLGVPYLLTARGNRVAAMWQVHNPRREAERLLQALPPGSRLGYSAVHAGGEVQEAYREALIALKAARPGEALSFAGLDPVAFVLLQQSPEDLKALVERFLPLPPKLLRTLEVYMESATLEEAARALHIHPNTLRYRLKRVEERIGPLSAPETLARVHLALRARSLLVG GT:EXON 1|1-498:0| BL:SWS:NREP 1 BL:SWS:REP 434->475|Y2266_MYCBO|1e-06|47.6|42/414| SEG 2->13|rgraaggnrrlr| SEG 135->167|lkresleralalrlfalapgmalaglldlflkl| SEG 239->258|llevaarllrlrarersver| SEG 261->276|eetlggalleglilge| SEG 304->324|lgrhrlaeerrreatlelrrr| RP:PDB:NREP 1 RP:PDB:REP 415->474|2ao9C|4e-05|20.0|60/117| RP:PFM:NREP 1 RP:PFM:REP 26->88|PF05158|9e-04|38.3|60/307|RNA_pol_Rpc34| HM:PFM:NREP 1 HM:PFM:REP 435->475|PF00126|6.3e-07|26.8|41/60|HTH_1| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF05158|IPR007832| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF05158|IPR007832| GO:PFM GO:0005634|"GO:nucleus"|PF05158|IPR007832| GO:PFM GO:0006350|"GO:transcription"|PF05158|IPR007832| RP:SCP:NREP 1 RP:SCP:REP 420->487|1yioA1|3e-06|16.2|68/70|a.4.6.2| HM:SCP:REP 432->475|1ixcA1|0.00035|29.5|44/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 7 OP:NHOMOORG 7 OP:PATTERN -------------------------------------------------------------------- ----1-------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------11-11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 77 STR:RPRED 15.5 SQ:SECSTR ##############################################################################################################################################################################################################################################################################################################################################################################################################################cHHHHHHHTTccHHHHHHHHHHHHHHHcccccccHHHHHHHHTccHHHHHHHHHHcHHHHTccc######HHHHHHHHHHTcc# DISOP:02AL 1-13| PSIPRED ccccccccHHHHHHHcccEEEEEccccccccccccEEHHHHHcccccccccccHHHHHHHccHHHHccccccEEEEcccccccccccccEEEEccHHHHHHHHcccccccccccHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccccEEEEcccccEEcccccccccccccccccccEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEccccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc //