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Thermus thermophilus HB27 (tthe0)
Gene : AAS81022.1
DDBJ      :             signal recognition particle protein ffh
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  898/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
a.24.13a.36.1c.37.1
:434 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->422 2ffhA PDBj e-177 81.3 %
:RPS:PDB   1->424 3dm5A PDBj 3e-47 33.8 %
:RPS:SCOP  2->88 1ffhA1  a.24.13.1 * 4e-12 74.7 %
:RPS:SCOP  89->295 1ffhA2  c.37.1.10 * 6e-15 80.5 %
:RPS:SCOP  295->420 1qzwA2  a.36.1.1 * 1e-36 34.1 %
:HMM:SCOP  1->94 1wgwA_ a.24.13.1 * 2.7e-23 39.4 %
:HMM:SCOP  89->295 1ls1A2 c.37.1.10 * 6.1e-56 45.4 %
:HMM:SCOP  295->421 1qzxA2 a.36.1.1 * 5.2e-39 54.3 %
:RPS:PFM   100->292 PF00448 * SRP54 1e-45 54.4 %
:RPS:PFM   322->417 PF02978 * SRP_SPB 7e-23 54.2 %
:HMM:PFM   99->293 PF00448 * SRP54 4.4e-71 58.5 195/196  
:HMM:PFM   320->417 PF02978 * SRP_SPB 1.1e-34 54.1 98/104  
:HMM:PFM   6->82 PF02881 * SRP54_N 5.9e-18 31.1 74/75  
:BLT:SWISS 1->434 SRP54_THEAQ 0.0 82.1 %
:PROS 266->279|PS00300|SRP54
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81022.1 GT:GENE AAS81022.1 GT:PRODUCT signal recognition particle protein ffh GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(658018..659322) GB:FROM 658018 GB:TO 659322 GB:DIRECTION - GB:PRODUCT signal recognition particle protein ffh GB:PROTEIN_ID AAS81022.1 GB:DB_XREF GI:46196606 LENGTH 434 SQ:AASEQ MFQQLAARLQEAIDRLRGRGRITEEDLKGTLREIRRALIEADVNLEVARAFVEEVRERALGRKVLESLTPAEVVLATVYEALKEALGGEPKHPQLKDRNVWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRVLGEKVGVPVLEVQDGESPESIRRRVEERARLEVRDLVLVDTAGRLQIDERLMEELVRLKAALRPDEVLLVLDAMTGQEALSVAQAFDERVGVTGLVLTKLDGDARGGAALSARRVTGKPIYFAGVSERPEGLEPFYPDRLAGRILGMGDVATLAEKVRQAGLEAEAPKSAKELTLEDFLKQMQNLKRLGSFSELLKLLPGVGRALPQGFQVDERAFKRLEAIVLSMTPEERKDPRILNASRRRRIAKGSGTTVQEVNRLVKAFEETKALMKSLERRKGRGLMGMFRR GT:EXON 1|1-434:0| BL:SWS:NREP 1 BL:SWS:REP 1->434|SRP54_THEAQ|0.0|82.1|430/430| PROS 266->279|PS00300|SRP54|PDOC00272| COIL:NAA 4 COIL:NSEG 1 COIL:REGION 31->34| SEG 46->59|evarafveevrera| SEG 169->187|rrrveerarlevrdlvlvd| BL:PDB:NREP 1 BL:PDB:REP 1->422|2ffhA|e-177|81.3|407/407| RP:PDB:NREP 1 RP:PDB:REP 1->424|3dm5A|3e-47|33.8|402/416| RP:PFM:NREP 2 RP:PFM:REP 100->292|PF00448|1e-45|54.4|193/196|SRP54| RP:PFM:REP 322->417|PF02978|7e-23|54.2|96/101|SRP_SPB| HM:PFM:NREP 3 HM:PFM:REP 99->293|PF00448|4.4e-71|58.5|195/196|SRP54| HM:PFM:REP 320->417|PF02978|1.1e-34|54.1|98/104|SRP_SPB| HM:PFM:REP 6->82|PF02881|5.9e-18|31.1|74/75|SRP54_N| GO:PFM:NREP 5 GO:PFM GO:0005525|"GO:GTP binding"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF02978|IPR004125| GO:PFM GO:0008312|"GO:7S RNA binding"|PF02978|IPR004125| GO:PFM GO:0048500|"GO:signal recognition particle"|PF02978|IPR004125| RP:SCP:NREP 3 RP:SCP:REP 2->88|1ffhA1|4e-12|74.7|87/87|a.24.13.1| RP:SCP:REP 89->295|1ffhA2|6e-15|80.5|200/200|c.37.1.10| RP:SCP:REP 295->420|1qzwA2|1e-36|34.1|126/138|a.36.1.1| HM:SCP:REP 1->94|1wgwA_|2.7e-23|39.4|94/0|a.24.13.1|1/1|Domain of the SRP/SRP receptor G-proteins| HM:SCP:REP 89->295|1ls1A2|6.1e-56|45.4|207/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 295->421|1qzxA2|5.2e-39|54.3|127/138|a.36.1.1|1/1|Signal peptide-binding domain|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s44444569C1664432224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 433 STR:RPRED 99.8 SQ:SECSTR ccTHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHccccTTccHHHHHHHHHHHHHHTccHHHTTcccccccEEEEEEccTTccHHHHHHHHHHHHHTTTccEEEEEcccccTHHHHHHHHHHGGGTcEEEccTTcccHHHHHHHHHHHHHHTTccEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEGGGGGGHHHHHHHHHHccTTEEEEEEcccccccHHHHHHHHHTTcccEEEEEccccTTcEEEccHHHHHHHHTTTTcHHHHHHHHHHHHTTHHHHHHTTcccHHHHHHHHHHHHTTccccEEEccccccccGGGccccccHHHHHHHHHHHTTccHHHHHcGGGccHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHTccccccccTTHHHH# DISOP:02AL 8-20, 345-363, 413-427, 431-434| PSIPRED cHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccc //