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Thermus thermophilus HB27 (tthe0)
Gene : AAS81048.1
DDBJ      :             transcription termination factor rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  782/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.140.4b.40.4c.37.1
:426 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   16->419 1pvoE PDBj 7e-97 51.5 %
:RPS:PDB   57->421 2ck3F PDBj 2e-59 20.0 %
:RPS:SCOP  8->55 1e7dA1  a.140.4.1 * 1e-05 16.7 %
:RPS:SCOP  61->134 1a62A2  b.40.4.5 * 4e-13 44.6 %
:RPS:SCOP  111->373 1bmfD3  c.37.1.11 * 8e-54 22.8 %
:HMM:SCOP  12->58 1a62A1 a.140.3.1 * 1.5e-08 44.7 %
:HMM:SCOP  59->134 1a62A2 b.40.4.5 * 1.5e-20 51.3 %
:HMM:SCOP  98->379 1e79A3 c.37.1.11 * 2.5e-74 38.3 %
:RPS:PFM   17->55 PF07498 * Rho_N 1e-05 53.8 %
:RPS:PFM   64->134 PF07497 * Rho_RNA_bind 8e-14 49.3 %
:RPS:PFM   166->337 PF00006 * ATP-synt_ab 2e-05 31.1 %
:HMM:PFM   165->371 PF00006 * ATP-synt_ab 6.3e-43 25.7 202/215  
:HMM:PFM   62->134 PF07497 * Rho_RNA_bind 9.7e-21 43.8 73/78  
:HMM:PFM   16->58 PF07498 * Rho_N 4.7e-14 46.5 43/43  
:BLT:SWISS 12->424 RHO_DEIRA e-163 73.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81048.1 GT:GENE AAS81048.1 GT:PRODUCT transcription termination factor rho GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(684635..685915) GB:FROM 684635 GB:TO 685915 GB:DIRECTION - GB:PRODUCT transcription termination factor rho GB:PROTEIN_ID AAS81048.1 GB:DB_XREF GI:46196632 LENGTH 426 SQ:AASEQ MRRKETLQETPLTYQELASKILPELHLLAQEAGIEGYKRMKKDQLIMALLERQTQGEGLRLVKGYLEISQDGYGFLTENLHNLESRVAIVSAGLIKQYALRAGDYVVGQARPPRENERYATLLKVEAVNNLDPEAAKNRPRFDELTPQFPDRQIRLETTPDELSTRVIDLLAPIGRGQRGLIVAPPKAGKTTLLKKIANAVLKNEPDIKVIVLLIDERPEEVTDFRESVQGAEVIASTFDEPPQNHIRVAEFVHERAKRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSAALYFPKRFLGAARNIRGGGSLTILATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERRIFPAIDILKSGTRREELLLGEEVTHKMWLLRKVLADMDPAEAMEMLLARLARTKNNKEFLASLAAR GT:EXON 1|1-426:0| BL:SWS:NREP 1 BL:SWS:REP 12->424|RHO_DEIRA|e-163|73.1|413/426| SEG 349->360|elhlsrrleerr| SEG 375->382|eelllgee| SEG 400->412|aeamemllarlar| BL:PDB:NREP 1 BL:PDB:REP 16->419|1pvoE|7e-97|51.5|396/407| RP:PDB:NREP 1 RP:PDB:REP 57->421|2ck3F|2e-59|20.0|360/466| RP:PFM:NREP 3 RP:PFM:REP 17->55|PF07498|1e-05|53.8|39/42|Rho_N| RP:PFM:REP 64->134|PF07497|8e-14|49.3|71/75|Rho_RNA_bind| RP:PFM:REP 166->337|PF00006|2e-05|31.1|161/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 165->371|PF00006|6.3e-43|25.7|202/215|ATP-synt_ab| HM:PFM:REP 62->134|PF07497|9.7e-21|43.8|73/78|Rho_RNA_bind| HM:PFM:REP 16->58|PF07498|4.7e-14|46.5|43/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 3 RP:SCP:REP 8->55|1e7dA1|1e-05|16.7|48/54|a.140.4.1| RP:SCP:REP 61->134|1a62A2|4e-13|44.6|74/78|b.40.4.5| RP:SCP:REP 111->373|1bmfD3|8e-54|22.8|259/276|c.37.1.11| HM:SCP:REP 12->58|1a62A1|1.5e-08|44.7|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 59->134|1a62A2|1.5e-20|51.3|76/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 98->379|1e79A3|2.5e-74|38.3|269/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1398 OP:NHOMOORG 785 OP:PATTERN -------------------------------------------------------------------- 1221211111111112211-111121111112111111112111211121121211111111212112221111111111111112221111111111111111111131222222222222222111111111112221111-12-1---------------1-------------------11111111222222222222222222222212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22322222222222222222111222111111211222222222222211323211211111224222222322311111111111-33333233332132223342222211122222333322211111111111211412222222211111111111111111111111112112221433354311113332222312223322211223222222212222223121421111111222122223122322233333222222232333331212222122222122222222222221111311222211213121312111211222211-1222211211132233232442222222-43223322224241221121113343244444444444444442122322342444444334343112111111222211423111111111111111111-1111112133232222222222323111111111121121111134111223333333411-111221122222222222222--------------------------2122222222132 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-21, 310-311, 313-314| PSIPRED ccccccccHHHHHHHHHHcccHHHHHHHHHHHcccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEccccccccEEEEcccccccccccccEEEEccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHccHHccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccEEEEEEEEEcccccccccHHHHHHHHcEEEEEEEHHHHHccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcc //