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Thermus thermophilus HB27 (tthe0)
Gene : AAS81240.1
DDBJ      :             DNA primase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  903/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.37.1e.13.1e.38.1g.41.3
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->334 2au3A PDBj 7e-44 34.0 %
:RPS:PDB   7->405 2au3A PDBj 1e-62 29.2 %
:RPS:SCOP  7->99 1d0qA  g.41.3.2 * 5e-30 50.0 %
:RPS:SCOP  127->307 1khtA  c.37.1.1 * 9e-32 17.6 %
:RPS:SCOP  522->569 1gqeA  e.38.1.1 * 6e-04 31.2 %
:HMM:SCOP  1->101 1d0qA_ g.41.3.2 * 2.3e-34 49.0 %
:HMM:SCOP  106->414 1dd9A_ e.13.1.1 * 9.9e-74 47.4 %
:RPS:PFM   4->96 PF01807 * zf-CHC2 9e-28 52.2 %
:RPS:PFM   127->239 PF08275 * Toprim_N 4e-25 53.1 %
:HMM:PFM   117->239 PF08275 * Toprim_N 3.2e-38 46.3 123/128  
:HMM:PFM   6->98 PF01807 * zf-CHC2 5e-33 46.7 92/98  
:HMM:PFM   248->309 PF01751 * Toprim 9.6e-09 32.3 62/96  
:HMM:PFM   355->382 PF10410 * DnaB_bind 0.00039 32.1 28/59  
:BLT:SWISS 19->418 PRIM_DEIRA 2e-75 39.4 %
:BLT:SWISS 515->563 MIAA_MOOTA 3e-04 34.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81240.1 GT:GENE AAS81240.1 GT:PRODUCT DNA primase GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 874715..876487 GB:FROM 874715 GB:TO 876487 GB:DIRECTION + GB:PRODUCT DNA primase GB:PROTEIN_ID AAS81240.1 GB:DB_XREF GI:46196825 LENGTH 590 SQ:AASEQ MDAGQAVELIKSRLSLREVVSRYVALKPAGRGRWKGLCPFHQEKTPSFYVDEEKGLFYCFGCKAGGDLFAFVQRAEGLDFPEALERLAEEAGVELPRRKAPERRRELLEVLALAQTYFLEHLHAHPEALAYLRKRGLTEESVARFGLGYAPPKGDGLVAFLARHGVAPEEGVRAGVLAERQGRFVDRLRHRITFPIKDAFGRVVAFTGRALGEDGPKYLNTPETPLFRKQEVLFAYPEARPALREGRAIVVEGLFDAIALHQLGFPETVAVLGSGLSEGQALLLKKAGVLEVYLAFDADEAGQKATLQSLNLELAPRFLFYAVRLPAKDPGELLLHPEGRALFQKALEEALPEVAFRFEEASRGLDLSRPEHKRKVLEALTPRMLTPEPFDPVAERLKALVVERLGLSPKSLEDYLASLRTRGRPAPPPPPPPLTPGNKTLLLELDAIALLLSAPEERFLELVDYVETQVWPPEGSFLGEFLALARKEPRRDHLRRTLSQREEGGRLFERLLLAPRGEDPRLQEKLDHTLARLREAYLQERLAKVKAALAQNPDPPTLERLLKEYQEIRVAIEAERRLYKRRPPPSGWST GT:EXON 1|1-590:0| BL:SWS:NREP 2 BL:SWS:REP 19->418|PRIM_DEIRA|2e-75|39.4|398/571| BL:SWS:REP 515->563|MIAA_MOOTA|3e-04|34.7|49/100| SEG 100->114|aperrrellevlala| SEG 419->437|lrtrgrpapppppppltpg| SEG 441->454|llleldaialllsa| SEG 501->513|reeggrlferlll| BL:PDB:NREP 1 BL:PDB:REP 7->334|2au3A|7e-44|34.0|324/403| RP:PDB:NREP 1 RP:PDB:REP 7->405|2au3A|1e-62|29.2|394/403| RP:PFM:NREP 2 RP:PFM:REP 4->96|PF01807|9e-28|52.2|92/95|zf-CHC2| RP:PFM:REP 127->239|PF08275|4e-25|53.1|113/129|Toprim_N| HM:PFM:NREP 4 HM:PFM:REP 117->239|PF08275|3.2e-38|46.3|123/128|Toprim_N| HM:PFM:REP 6->98|PF01807|5e-33|46.7|92/98|zf-CHC2| HM:PFM:REP 248->309|PF01751|9.6e-09|32.3|62/96|Toprim| HM:PFM:REP 355->382|PF10410|0.00039|32.1|28/59|DnaB_bind| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF01807|IPR002694| GO:PFM GO:0003896|"GO:DNA primase activity"|PF01807|IPR002694| GO:PFM GO:0006260|"GO:DNA replication"|PF01807|IPR002694| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01807|IPR002694| RP:SCP:NREP 3 RP:SCP:REP 7->99|1d0qA|5e-30|50.0|92/102|g.41.3.2| RP:SCP:REP 127->307|1khtA|9e-32|17.6|153/190|c.37.1.1| RP:SCP:REP 522->569|1gqeA|6e-04|31.2|48/362|e.38.1.1| HM:SCP:REP 1->101|1d0qA_|2.3e-34|49.0|100/0|g.41.3.2|1/1|Zinc beta-ribbon| HM:SCP:REP 106->414|1dd9A_|9.9e-74|47.4|306/314|e.13.1.1|1/1|DNA primase core| OP:NHOMO 967 OP:NHOMOORG 907 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111112111111111411111111151111111111111111111111111111212111--1112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111-111121211111111111111111111111111111111111111111111121111111111111111111111111111111112111111111111111111111111111-113111111111111111111111111111111111111111111111111111111111111111111222111111111111111112111111111111111111-211111111111111111111111111-1111-11111111331111111111111-111111111111111111111171991111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-1111111111111111111321211121111111111111111151111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------1----------------11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 408 STR:RPRED 69.2 SQ:SECSTR ####HHHHHHHHHccHHHHHHHHcccEEETTEEEEEcccccccccccEEEETTTTEEEETTTccEEcHHHHHHHHHTccHHHHHHHHHHHHTccccTTcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHTTccHHHHHHTTcEEcccHHHHHHHHHcHHTcHHHHHTTTcEEcccTTccEETTTTEEEEEEEcTTccEEEEEEEEcccccccEEEccccccccGGGcEETHHHHHHHHHHTcEEEcccHHHHHHHHHTTcccEEEEccccccHHHHHHHHTHTccEEEEEccccHHHHHHHHHHHHHHHHTTcEEEEEcccTTccHHHHHHHHcHHHHHHHHHHcccHHHHHHHHGGGGcHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHcHHHTTccTcccGGG################################################################################################################################################################################## DISOP:02AL 1-2, 95-107, 414-442, 541-560, 571-590| PSIPRED cccHHHHHHHHHHccHHHHHHHHccccccccccEEEcccccccccccEEEEEcccEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHccEEEccccEEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHcccEEEEEEcHHHHHHHHHcccccEEEcccccccHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //