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Thermus thermophilus HB27 (tthe0)
Gene : AAS81564.1
DDBJ      :             DNA gyrase subunit B
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  191/199 : Viruses  10/175   --->[See Alignment]
b.30.6d.122.1d.14.1d.173.1d.175.1e.11.1
:640 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->376 1kijA PDBj 0.0 99.5 %
:BLT:PDB   418->632 3fofD PDBj 2e-59 63.2 %
:RPS:PDB   20->377 3cwvB PDBj 2e-83 27.5 %
:RPS:PDB   300->615 1dc1B PDBj 3e-84 12.6 %
:RPS:SCOP  1->186 1j6rA  d.173.1.2 * 1e-50 13.0 %
:RPS:SCOP  204->309 1pyyA3  d.175.1.1 * 2e-11 15.2 %
:RPS:SCOP  317->603 1jmmA  b.30.6.1 * 2e-93 12.2 %
:HMM:SCOP  8->223 1s16A2 d.122.1.2 * 1.9e-67 49.3 %
:HMM:SCOP  225->396 1kijA1 d.14.1.3 * 7e-52 51.7 %
:HMM:SCOP  398->639 1bjtA_ e.11.1.1 * 7e-95 61.3 %
:RPS:PFM   225->377 PF00204 * DNA_gyraseB 3e-35 49.3 %
:RPS:PFM   422->525 PF01751 * Toprim 2e-15 48.5 %
:RPS:PFM   569->630 PF00986 * DNA_gyraseB_C 7e-22 69.4 %
:HMM:PFM   225->394 PF00204 * DNA_gyraseB 1.1e-54 49.7 169/173  
:HMM:PFM   568->630 PF00986 * DNA_gyraseB_C 8e-33 73.0 63/65  
:HMM:PFM   38->177 PF02518 * HATPase_c 4.9e-18 33.3 102/111  
:HMM:PFM   424->526 PF01751 * Toprim 8.9e-10 24.0 75/96  
:BLT:SWISS 9->640 GYRB_CLOAB 0.0 56.1 %
:PROS 426->434|PS00177|TOPOISOMERASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81564.1 GT:GENE AAS81564.1 GT:PRODUCT DNA gyrase subunit B GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 1184740..1186662 GB:FROM 1184740 GB:TO 1186662 GB:DIRECTION + GB:PRODUCT DNA gyrase subunit B GB:PROTEIN_ID AAS81564.1 GB:DB_XREF GI:46197150 LENGTH 640 SQ:AASEQ MWYTEGVNYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGREEVFLDKGGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGVGIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKRVELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI GT:EXON 1|1-640:0| BL:SWS:NREP 1 BL:SWS:REP 9->640|GYRB_CLOAB|0.0|56.1|626/637| PROS 426->434|PS00177|TOPOISOMERASE_II|PDOC00160| SEG 378->398|kalraaqareaarkarelvrr| BL:PDB:NREP 2 BL:PDB:REP 13->376|1kijA|0.0|99.5|364/384| BL:PDB:REP 418->632|3fofD|2e-59|63.2|190/199| RP:PDB:NREP 2 RP:PDB:REP 20->377|3cwvB|2e-83|27.5|306/311| RP:PDB:REP 300->615|1dc1B|3e-84|12.6|294/311| RP:PFM:NREP 3 RP:PFM:REP 225->377|PF00204|3e-35|49.3|152/169|DNA_gyraseB| RP:PFM:REP 422->525|PF01751|2e-15|48.5|99/110|Toprim| RP:PFM:REP 569->630|PF00986|7e-22|69.4|62/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 225->394|PF00204|1.1e-54|49.7|169/173|DNA_gyraseB| HM:PFM:REP 568->630|PF00986|8e-33|73.0|63/65|DNA_gyraseB_C| HM:PFM:REP 38->177|PF02518|4.9e-18|33.3|102/111|HATPase_c| HM:PFM:REP 424->526|PF01751|8.9e-10|24.0|75/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 1->186|1j6rA|1e-50|13.0|177/197|d.173.1.2| RP:SCP:REP 204->309|1pyyA3|2e-11|15.2|105/120|d.175.1.1| RP:SCP:REP 317->603|1jmmA|2e-93|12.2|287/377|b.30.6.1| HM:SCP:REP 8->223|1s16A2|1.9e-67|49.3|213/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 225->396|1kijA1|7e-52|51.7|172/172|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 398->639|1bjtA_|7e-95|61.3|238/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1990 OP:NHOMOORG 1133 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222322222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222322222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222322222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-1221141211121111111111111111111111111-111111111111111111111111111-111111111111-111111-12112111111121111115212223341212222221319F2-426222221223222222-13-422313812131111443323222F2222252391533443222 ---11--------------1---------------111-2----------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 633 STR:RPRED 98.9 SQ:SECSTR ######ccccGGGcccccTHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEEcccHHHHHHTTTcccHHHHHTEEEEEEEEcccccccccccccccHHHHHHHTEEEEEEEEEETcccEEEEEETTEEcccccccccccccccEEEEEEEEcTTTcccccccHHHHHHHHHHHHHHcTTcEEEEEETTTTEEEEEEcTTHHHHHHHHHHTTccccccccEEEEEEETTEEEEEEEEEccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHHHGGGTTTcccGGGccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccGGGGGGcGGGHHHHHHHTTccHHHHTTccHHHHHHHHHHHHcccEccEEEEEEEHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEcHETTEEEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHTTHHHcccEEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHHHHHHHHHTTTTcccHHHHHHHHHHHHTTcccc# DISOP:02AL 1-14, 386-409| PSIPRED ccccccccccHHHEEEEccccHHHHcccEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccccccccEEccccccHHHEEEEEEEccccccccEEEEEcccccccEEEEEEEEEEEEEEEEEccEEEEEEEEccEEccccEEEcccccccccEEEEEEEcHHHHccccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEcccHHHHHHHHHHcccccccccEEEEEEEcccEEEEEEEEEcccccEEEEEEEccEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccEEEEEEcccccHHHHcccccccEEEEEEcccEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEccEEEEEccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcHHHcEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHccEEEccc //