[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermus thermophilus HB27 (tthe0)
Gene : AAS81809.1
DDBJ      :             2'-5' RNA ligase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  48/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.61.1
:198 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->183 1iuhA PDBj 2e-98 100.0 %
:RPS:PDB   2->174 2d4gA PDBj 6e-19 19.2 %
:RPS:SCOP  1->183 1iuhA  d.61.1.2 * 1e-36 92.9 %
:HMM:SCOP  1->183 1iuhA_ d.61.1.2 * 1.5e-48 43.2 %
:RPS:PFM   29->88 PF02834 * 2_5_RNA_ligase 5e-06 43.3 %
:HMM:PFM   7->89 PF02834 * 2_5_RNA_ligase 2.5e-19 36.1 83/87  
:HMM:PFM   103->171 PF02834 * 2_5_RNA_ligase 1.1e-12 33.8 65/87  
:BLT:SWISS 1->177 Y2157_ARCFU 4e-17 38.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81809.1 GT:GENE AAS81809.1 GT:PRODUCT 2'-5' RNA ligase GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1390864..1391460) GB:FROM 1390864 GB:TO 1391460 GB:DIRECTION - GB:PRODUCT 2'-5' RNA ligase GB:PROTEIN_ID AAS81809.1 GB:DB_XREF GI:46197396 LENGTH 198 SQ:AASEQ MRLFYAVFLPEEVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGTGYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAPAPRVPPVLFGLEWPVEGFALVRSELKPKGPVYTVLEKFSLRGEHGREQAQGPGERPEGD GT:EXON 1|1-198:0| BL:SWS:NREP 1 BL:SWS:REP 1->177|Y2157_ARCFU|4e-17|38.0|166/176| SEG 134->146|arrkapaprvppv| BL:PDB:NREP 1 BL:PDB:REP 1->183|1iuhA|2e-98|100.0|183/183| RP:PDB:NREP 1 RP:PDB:REP 2->174|2d4gA|6e-19|19.2|156/165| RP:PFM:NREP 1 RP:PFM:REP 29->88|PF02834|5e-06|43.3|60/86|2_5_RNA_ligase| HM:PFM:NREP 2 HM:PFM:REP 7->89|PF02834|2.5e-19|36.1|83/87|2_5_RNA_ligase| HM:PFM:REP 103->171|PF02834|1.1e-12|33.8|65/87|2_5_RNA_ligase| RP:SCP:NREP 1 RP:SCP:REP 1->183|1iuhA|1e-36|92.9|183/183|d.61.1.2| HM:SCP:REP 1->183|1iuhA_|1.5e-48|43.2|183/183|d.61.1.2|1/1|LigT-like| OP:NHOMO 61 OP:NHOMOORG 61 OP:PATTERN -------1--------11-----1-----------------------111---11-1---1---1--1 -11-------------------------------------------------------------------------------111----------------------------------------------------1111----1-------------------------------------111111---------------------1--------------------1--------------------------------------------------------------------------------------------------------------------------------1--11---------1-------------------------------------------------------------------1-1---------------------------------------------------------------------------------------------------------------------------------------1-----1-1111--1-----1-1-------------------------------1--------------------------------------1-11--------------------------------1---11-----1-------------1------------------------1----------------------------------------------------------------------------------------------------------------------------------------------1--1-1-1-1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 92.4 SQ:SECSTR cEEEEEccccHHHHHHHHHHHHHHcTcTTEGGGGTccccccccccEEccGGGHHHHHHHHHHHHHTcccEEEEEEEEEcTTTccccccEEEEEccHHHHHHHHHTTHHHHHHHGGcGGGccccccccccEEEEHHHHHHHHHHHTccccEEEEEcEEEEEEEcTTccEEEEEEEEEEEccccc############### DISOP:02AL 179-198| PSIPRED cEEEEEccccHHHHHHHHHHHHHcccccccEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccHHHHHHccccccEEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccc //