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Thermus thermophilus HB27 (tthe0)
Gene : AAS81951.1
DDBJ      :             DNA polymerase III, beta chain
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  767/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.131.1
:375 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->375 1vpkA PDBj 1e-32 28.0 %
:RPS:PDB   1->374 2awaB PDBj 7e-62 25.0 %
:RPS:SCOP  1->122 1jqjA1  d.131.1.1 * 1e-19 30.5 %
:RPS:SCOP  131->256 1vpkA2  d.131.1.1 * 2e-19 23.6 %
:RPS:SCOP  257->375 1vpkA3  d.131.1.1 * 9e-25 31.9 %
:HMM:SCOP  1->122 1vpkA1 d.131.1.1 * 2.4e-12 28.2 %
:HMM:SCOP  135->256 1vpkA2 d.131.1.1 * 5.9e-17 31.1 %
:HMM:SCOP  257->375 2polA3 d.131.1.1 * 1.3e-24 33.6 %
:RPS:PFM   1->122 PF00712 * DNA_pol3_beta 7e-13 37.6 %
:RPS:PFM   139->214 PF02767 * DNA_pol3_beta_2 1e-08 39.2 %
:RPS:PFM   257->374 PF02768 * DNA_pol3_beta_3 7e-16 33.9 %
:HMM:PFM   140->255 PF02767 * DNA_pol3_beta_2 2.5e-19 34.8 112/116  
:HMM:PFM   257->362 PF02768 * DNA_pol3_beta_3 2.2e-19 35.8 106/121  
:HMM:PFM   1->122 PF00712 * DNA_pol3_beta 1.3e-15 29.9 117/120  
:BLT:SWISS 1->375 DPO3B_CAUCR 2e-34 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81951.1 GT:GENE AAS81951.1 GT:PRODUCT DNA polymerase III, beta chain GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 1524642..1525769 GB:FROM 1524642 GB:TO 1525769 GB:DIRECTION + GB:PRODUCT DNA polymerase III, beta chain GB:PROTEIN_ID AAS81951.1 GB:DB_XREF GI:46197538 LENGTH 375 SQ:AASEQ MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAEAQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGYPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFRAVASDGYRLALYDLPLPQGFQAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALALEGGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLLLEEGRILLSAEGDYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPVGDRAHLGISGPTSPSLIWGDGEGYRAVVVPLRV GT:EXON 1|1-375:0| BL:SWS:NREP 1 BL:SWS:REP 1->375|DPO3B_CAUCR|2e-34|28.7|362/372| SEG 215->239|lkgadgaeadlalgegvlalalegg| BL:PDB:NREP 1 BL:PDB:REP 1->375|1vpkA|1e-32|28.0|361/367| RP:PDB:NREP 1 RP:PDB:REP 1->374|2awaB|7e-62|25.0|360/375| RP:PFM:NREP 3 RP:PFM:REP 1->122|PF00712|7e-13|37.6|117/119|DNA_pol3_beta| RP:PFM:REP 139->214|PF02767|1e-08|39.2|74/116|DNA_pol3_beta_2| RP:PFM:REP 257->374|PF02768|7e-16|33.9|118/121|DNA_pol3_beta_3| HM:PFM:NREP 3 HM:PFM:REP 140->255|PF02767|2.5e-19|34.8|112/116|DNA_pol3_beta_2| HM:PFM:REP 257->362|PF02768|2.2e-19|35.8|106/121|DNA_pol3_beta_3| HM:PFM:REP 1->122|PF00712|1.3e-15|29.9|117/120|DNA_pol3_beta| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00712|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00712|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF00712|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF00712|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF00712|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02767|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02767|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02767|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02767|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02767|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02768|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02768|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02768|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02768|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02768|IPR001001| RP:SCP:NREP 3 RP:SCP:REP 1->122|1jqjA1|1e-19|30.5|118/122|d.131.1.1| RP:SCP:REP 131->256|1vpkA2|2e-19|23.6|123/123|d.131.1.1| RP:SCP:REP 257->375|1vpkA3|9e-25|31.9|119/123|d.131.1.1| HM:SCP:REP 1->122|1vpkA1|2.4e-12|28.2|117/0|d.131.1.1|1/3|DNA clamp| HM:SCP:REP 135->256|1vpkA2|5.9e-17|31.1|119/0|d.131.1.1|2/3|DNA clamp| HM:SCP:REP 257->375|2polA3|1.3e-24|33.6|119/0|d.131.1.1|1/1|DNA clamp| OP:NHOMO 801 OP:NHOMOORG 768 OP:PATTERN -------------------------------------------------------------------- 111-1111---11-11112-11111111111111112111111111111--11111111111111111212-1111111-1-11-111111--1-----1-111-1---111111111111111111111-11--11111112211111111111111111111111221111111111111112111111411222222221222222--1111222-11111111111111111111111111111111111111111111111111111111-11111111111-111111111111111111111111111----111111111111111111111111111-11111--1111111-111111111-1111111111111111111111111111111111111-11111111111111121111111111111111111111111111111111111111111111111-11111111111111---1-11111111111111111111111111111111111111--111-11111112111111111111-11111111-1111-------------11111111111111111------------1------------11111111111-111111111111111111111--1111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--1-11111111111111111111111111111------1---1111111112111111111111111111111111111111111111111111111111-1-111111--------11--------------------------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 375 STR:RPRED 100.0 SQ:SECSTR cEEEEEHHHHHHHHHHHHTTcccccccGGGGEEEEEEcccEEEEEEEcccEEEEEEEETTcGEcEEEEEEHHHHHHHHHHccccEEEEEEETEEETTTEEEEEETTEEEEEEcccGGGccccccccccccccEEEEHHHEEEEHHHHHHHHGGGccccTTcGGGGEEEEEEETTEEEEEEEcccEEEEEEEEcccccccEEEEEHHHHHHHHHHccTTccEEEEEEcccEEEEEcEEEcccEEEEEEcccccccccGGGccccccEEEEEEHHHHHHHHHHHHHHTTcccccEEEEEETTEEEEEEEETTEEEEEEEccEEEEccEEEEEcHHHHHHHHHTcccEEEEEEccccccEEEEcccccEEEEEccccc PSIPRED cEEEEEHHHHHHHHHHHHHHccccccccHHcEEEEEEEccEEEEEEEccEEEEEEEEEEEEccccEEEEEHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEccEEEEEccccHHHcccccccccccccccEEEEEEcHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEEcccEEEEEEEEcccccccEEEEEcccHHHHHHHHccccccEEEEEEcccEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEcccccEEEEEEEEEEEcccEEEEEcHHHHHHHHHHcccEEEEEEEcccccEEEEEccccEEEEEEEEEc //