[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermus thermophilus HB27 (tthe0)
Gene : AAS82014.1
DDBJ      :             cytochrome c oxidase polypeptide II
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  598/915 : Eukaryota  53/199 : Viruses  0/175   --->[See Alignment]
a.3.1b.6.1f.17.2
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->236 1fftB PDBj 3e-26 33.6 %
:BLT:PDB   239->328 1co6A PDBj 5e-05 34.1 %
:RPS:PDB   117->262 1cywA PDBj 4e-35 33.6 %
:RPS:PDB   237->327 1co6A PDBj 9e-17 31.5 %
:RPS:SCOP  117->248 1cywA  b.6.1.2 * 7e-33 34.8 %
:RPS:SCOP  238->324 1dvhA  a.3.1.1 * 6e-16 23.4 %
:HMM:SCOP  22->112 1fftB2 f.17.2.1 * 5.3e-17 24.2 %
:HMM:SCOP  108->271 1fftB1 b.6.1.2 * 4.2e-52 43.3 %
:HMM:SCOP  226->325 1ccrA_ a.3.1.1 * 5.5e-20 37.4 %
:RPS:PFM   117->208 PF00116 * COX2 3e-20 45.7 %
:RPS:PFM   238->322 PF00034 * Cytochrom_C 2e-07 42.7 %
:HMM:PFM   139->213 PF00116 * COX2 1.2e-23 41.3 75/120  
:HMM:PFM   237->324 PF00034 * Cytochrom_C 3.1e-13 28.4 88/91  
:HMM:PFM   32->98 PF02790 * COX2_TM 1.1e-07 21.3 61/84  
:BLT:SWISS 63->326 COX2_BACPF 1e-50 39.5 %
:PROS 160->208|PS00078|COX2
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS82014.1 GT:GENE AAS82014.1 GT:PRODUCT cytochrome c oxidase polypeptide II GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1585711..1586724) GB:FROM 1585711 GB:TO 1586724 GB:DIRECTION - GB:PRODUCT cytochrome c oxidase polypeptide II GB:PROTEIN_ID AAS82014.1 GB:DB_XREF GI:46197601 LENGTH 337 SQ:AASEQ MQRSFAALGLWGLSLAQEAHRVAITHPGGSFNQEVAFLFPWVYFFSFLIFLVVAGSLAYVTWKFRARPEDQEEPPQIHGNDRLEVVWTLIPLAIVLVLFGLTAKALIQVNRPIPGALKVEVTGYQFWWDFHYPELGLRNSNELVLPAGVPVELEITSKDVIHSFWVPGLSGKRDAIPGQTTRISFEPKEPGLYYGFCAELCGASHARMLFRVVVLPKEEFDRFVEQAKASPAPVADERGQQVFQQNCAACHGVARSMPPAVIGPELGLLGNRTSLGAGIVENTPENLKAWIRDPAGMKPGVKMPGFPQLSEEDLDALARYLEGLKVEGFDFGALPKF GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 63->326|COX2_BACPF|1e-50|39.5|261/342| PROS 160->208|PS00078|COX2|PDOC00075| TM:NTM 2 TM:REGION 34->56| TM:REGION 84->106| BL:PDB:NREP 2 BL:PDB:REP 23->236|1fftB|3e-26|33.6|211/257| BL:PDB:REP 239->328|1co6A|5e-05|34.1|88/107| RP:PDB:NREP 2 RP:PDB:REP 117->262|1cywA|4e-35|33.6|140/159| RP:PDB:REP 237->327|1co6A|9e-17|31.5|89/107| RP:PFM:NREP 2 RP:PFM:REP 117->208|PF00116|3e-20|45.7|92/119|COX2| RP:PFM:REP 238->322|PF00034|2e-07|42.7|82/89|Cytochrom_C| HM:PFM:NREP 3 HM:PFM:REP 139->213|PF00116|1.2e-23|41.3|75/120|COX2| HM:PFM:REP 237->324|PF00034|3.1e-13|28.4|88/91|Cytochrom_C| HM:PFM:REP 32->98|PF02790|1.1e-07|21.3|61/84|COX2_TM| GO:PFM:NREP 6 GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF00116|IPR002429| GO:PFM GO:0005507|"GO:copper ion binding"|PF00116|IPR002429| GO:PFM GO:0016020|"GO:membrane"|PF00116|IPR002429| GO:PFM GO:0005506|"GO:iron ion binding"|PF00034|IPR003088| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00034|IPR003088| GO:PFM GO:0020037|"GO:heme binding"|PF00034|IPR003088| RP:SCP:NREP 2 RP:SCP:REP 117->248|1cywA|7e-33|34.8|132/159|b.6.1.2| RP:SCP:REP 238->324|1dvhA|6e-16|23.4|77/79|a.3.1.1| HM:SCP:REP 22->112|1fftB2|5.3e-17|24.2|91/91|f.17.2.1|1/1|Cytochrome c oxidase subunit II-like, transmembrane region| HM:SCP:REP 108->271|1fftB1|4.2e-52|43.3|164/166|b.6.1.2|1/1|Cupredoxins| HM:SCP:REP 226->325|1ccrA_|5.5e-20|37.4|99/0|a.3.1.1|1/1|Cytochrome c| OP:NHOMO 1045 OP:NHOMOORG 676 OP:PATTERN 11----1111111111--1-1---41111111-----------------------------1----11 12421111111111-1111-111111111111111111111111111111111111111111111111111------------1-------------------1-11121--------------11----------22222---11132211111112122222212434211111111211212-11---22222222222222222222222222212322111111113211111111111111111111--------------------------------------------------------------------------------------------------1---------------------1-21222111111243333112232222222212221335435344421422244335554211112123333122111111112221212-111111111111111111111111-111111112-1332443333433333333644443334546551144522222212151321121121-------1234211-----11-1-111-1-1-1111-222222---------------------------221113111122111222121222221122121--31-111111111111111111111111-1111111111111111111111111111111111111111111111----111111111111111111111111121112111---------------1111111---2122222322222222111-11111111-1--2-----221113322222222111111--111111----------------------------------------------12- 11------1-----1--1---------11--1111-------------------111-----1-11----------1----------------1---1--1---11------11111-----1-11-1-16--11-----1--11--------1-1-------2--12--1-11-111-------1--2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 311 STR:RPRED 92.3 SQ:SECSTR ######################ccccTTEEEEEEEEccccEEEcccTTcHHHHHHTTcEEEEEEEcTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGGcccEEEEEEEETTEEEEEETTTTEEEEcEEEEETTcEEEEEEEEccccEEEEEGGGTEEEEEcTTccEEEEEEccccEEEEEcccccccTTTTTccEEEEEccHHHHHHHHHHHHTccccccccccccEEEcccTTTccccTTHHHHHHccccTTcTTccTHHHTcccccTTHHHHHHTcHHHHcTTccccccccccHHHHHHHHHHHHHHcTTcccccc#### DISOP:02AL 1-3, 225-241| PSIPRED ccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccEEHHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEEEEEEEEEEEEcccccccccEEEEEccccEEEEEEEcHHHHHHHHHHHccEEccccccEEEEEEEEcccEEEEEEEHHHcccccccccEEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccc //