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Thermus thermophilus HB27 (tthe0)
Gene : AAS82054.1
DDBJ      :             23S rRNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  721/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->235 1ipaA PDBj 5e-39 37.9 %
:RPS:PDB   118->256 3e5yA PDBj 2e-24 27.3 %
:RPS:SCOP  1->98 1ipaA2  d.79.3.3 * 5e-16 39.8 %
:RPS:SCOP  118->254 1ipaA1  c.116.1.1 * 4e-37 63.5 %
:HMM:SCOP  1->98 1ipaA2 d.79.3.3 * 8.9e-24 46.9 %
:HMM:SCOP  99->256 1ipaA1 c.116.1.1 * 3.8e-41 47.5 %
:RPS:PFM   118->248 PF00588 * SpoU_methylase 2e-17 45.0 %
:HMM:PFM   110->248 PF00588 * SpoU_methylase 7.6e-36 44.2 138/142  
:HMM:PFM   30->97 PF08032 * SpoU_sub_bind 1.5e-08 30.9 68/76  
:BLT:SWISS 2->248 YSGA_BACSU 3e-24 30.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS82054.1 GT:GENE AAS82054.1 GT:PRODUCT 23S rRNA methyltransferase GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 1628837..1629619 GB:FROM 1628837 GB:TO 1629619 GB:DIRECTION + GB:PRODUCT 23S rRNA methyltransferase GB:PROTEIN_ID AAS82054.1 GB:DB_XREF GI:46197641 LENGTH 260 SQ:AASEQ MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELSERALARVSARENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVFALPVYPVAEEEAARFLEEQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAPL GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 2->248|YSGA_BACSU|3e-24|30.4|240/248| TM:NTM 2 TM:REGION 99->121| TM:REGION 123->145| SEG 40->53|aleaglsletlllg| SEG 100->117|lagvtlgaaplvlvllgl| BL:PDB:NREP 1 BL:PDB:REP 1->235|1ipaA|5e-39|37.9|235/258| RP:PDB:NREP 1 RP:PDB:REP 118->256|3e5yA|2e-24|27.3|139/156| RP:PFM:NREP 1 RP:PFM:REP 118->248|PF00588|2e-17|45.0|131/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 110->248|PF00588|7.6e-36|44.2|138/142|SpoU_methylase| HM:PFM:REP 30->97|PF08032|1.5e-08|30.9|68/76|SpoU_sub_bind| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 1->98|1ipaA2|5e-16|39.8|98/100|d.79.3.3| RP:SCP:REP 118->254|1ipaA1|4e-37|63.5|137/158|c.116.1.1| HM:SCP:REP 1->98|1ipaA2|8.9e-24|46.9|98/105|d.79.3.3|1/1|L30e-like| HM:SCP:REP 99->256|1ipaA1|3.8e-41|47.5|158/0|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 1083 OP:NHOMOORG 728 OP:PATTERN -----------------------1-------------------------------------------- 222-212222211222222-22112222222221112222-111-2111111111------11212122211111111-1111---11222222222-1333223221221111111111111112222223232122233---4223112212222223221221122221222211222212232222-22222222222222222222222222222222111111112222222222222222222222221222222222222222222222122222222211222212222122222222222222222222222222222222222222222222222222211222222222122122222121121222111111-------------11111111111---1--11-11--111111111111-111-------------------------1-------------------------------11-1122222222222111111121111111212222212222221111111222221221211132221222212-1-2-----------1111--1-111-1122-1----------------------11111111311112111111111111111111111-112-1------11111111111111111-1111111111111111111111111111111111111111111211111111-111111111111-1111111111111-11111111111111111111111111111121211111111111111---------11-112222222222111-1--1111111111-331111---1-11---1-1----1-1--1-----1---1--1111-1-1-1--11 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------1---------------3-1------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 258 STR:RPRED 99.2 SQ:SECSTR cEEccTTcHHHHHHHGGGcHHHHHHHTEEEEEcHHHHHHHHHTTccEEEEEEETTccHHHHHHHcccEEEEEcHHHHHHHccccccccEEEEEEccccccccccccTTcEEEEEEccccHHHHHHHHHHHHHHTcEEEEEcccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHcccGGGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHHTccGGGEEEcccccccccccHHHHHHHHHHHHHHHTTTcc## DISOP:02AL 19-23, 258-260| PSIPRED cEEcccccHHHHHHHHHHHcccccHHcEEEEEEHHHHHHHHHcccEEEEEEEEccccccHHHHHccccEEEEcHHHHHHHHcccccccEEEEEEcccccccHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHccHHHEEEEEEEccHHHHHHHHHcccEEEEEccccccEEEEccccccEEEEEccccccccHHHHHHcccEEEEcccccccEEHHHHHHHHHHHHHHHHHcccccc //