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Thermus thermophilus HB27 (tthe0)
Gene : AAS82109.1
DDBJ      :             ribosomal large subunit pseudouridine synthase B
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  865/915 : Eukaryota  28/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:235 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->232 3dh3C PDBj 6e-26 30.3 %
:RPS:PDB   5->232 3dh3B PDBj 5e-30 29.2 %
:RPS:SCOP  3->57 1vioA2  d.66.1.5 * 1e-13 25.5 %
:RPS:SCOP  64->229 1kskA4  d.265.1.3 * 1e-27 31.7 %
:HMM:SCOP  5->102 1fjgD_ d.66.1.2 * 3.1e-22 42.7 %
:HMM:SCOP  60->229 1vioA1 d.265.1.3 * 5.2e-38 36.9 %
:RPS:PFM   64->140 PF00849 * PseudoU_synth_2 2e-05 41.6 %
:HMM:PFM   64->145 PF00849 * PseudoU_synth_2 9.3e-19 29.3 82/164  
:HMM:PFM   5->49 PF01479 * S4 8.8e-18 51.1 45/48  
:BLT:SWISS 1->235 Y1464_AQUAE 1e-42 45.1 %
:PROS 100->114|PS01149|PSI_RSU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS82109.1 GT:GENE AAS82109.1 GT:PRODUCT ribosomal large subunit pseudouridine synthase B GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1674837..1675544) GB:FROM 1674837 GB:TO 1675544 GB:DIRECTION - GB:PRODUCT ribosomal large subunit pseudouridine synthase B GB:PROTEIN_ID AAS82109.1 GB:DB_XREF GI:46197697 LENGTH 235 SQ:AASEQ MKALRLQAFLARAGVASRRKAEDLIREGRVRVNGKVAVLGQKVGPEDLVEVDGKRVELPQKRLVLALHKPKGYTTTRHDPHARRTVFDLLPKIPGLHPVGRLDRDSEGLLLLTNDGDLTHRLTHPRFGVRKVYRVWTEGGTLPKEVCRRLLLGVDLEDGPARALACCPAPGGAVLVLAEGRKREVRRMLQRVGYPVRRLLRLQVGPIRLGDLPPGKWRRLSEREVKALLRLVGLE GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 1->235|Y1464_AQUAE|1e-42|45.1|233/249| PROS 100->114|PS01149|PSI_RSU|PDOC00885| SEG 108->119|glllltndgdlt| BL:PDB:NREP 1 BL:PDB:REP 3->232|3dh3C|6e-26|30.3|228/239| RP:PDB:NREP 1 RP:PDB:REP 5->232|3dh3B|5e-30|29.2|226/241| RP:PFM:NREP 1 RP:PFM:REP 64->140|PF00849|2e-05|41.6|77/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 64->145|PF00849|9.3e-19|29.3|82/164|PseudoU_synth_2| HM:PFM:REP 5->49|PF01479|8.8e-18|51.1|45/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 3->57|1vioA2|1e-13|25.5|55/58|d.66.1.5| RP:SCP:REP 64->229|1kskA4|1e-27|31.7|164/172|d.265.1.3| HM:SCP:REP 5->102|1fjgD_|3.1e-22|42.7|96/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 60->229|1vioA1|5.2e-38|36.9|168/0|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 1903 OP:NHOMOORG 893 OP:PATTERN -------------------------------------------------------------------- 1221111111111111111-11111111111111111111111111111111111111--11111111111-1111111111121222111111-11--21222132212-1111111-11111111111111111111111111121122212122212112211222221211111211111112222-222-4444444344444422222244422232332222223332222222222222222222-21222212222211222221112333333333322333333333333333333333333333333333323224222222242422223344232112221111121111222222-21211322311111121111111111111111111111-3322222212112111222222221144122111112221111111111111322------------1111111111111-----1212-1222232222324444224344444433433443333333444433332433454444333333322244421112111111111111111121111113111211111111111111111111111133342354324545454355535534-56365--2111211-11143222444443444444-4444444444444444444444333343333333333333333544434442-433343333444--2211111222223234333323322232222222222333233333323333-2333323111111111354454444444544555555555512221112221111111111112-311111-11111--11111--11---2212211111123 11--22--1---------------------------------------------------------------------------------------------------21-----------------------------------------------------2---------1---215213-111-1-113242222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 97.9 SQ:SECSTR ##ccEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGGEEEEEEcTTcccccccccTTcHHHHHTccccccEEccccccccEEEEEEEccTHHHHHHHcGGGcccEEEEEEEcccHccHHHHHHHHTcccccccccccEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETTEEcTTccTTcEEEccHHHHHHHHHTc### PSIPRED cccHHHHHHHHHcccccHHHHHHHHHcccEEEccEEcccccccccccEEEEEEcccccccccEEEEEEccccEEEEccccccccHHHHHHHHccccccccccccccEEEEEEEccHHHHHHHHcHHHcccEEEEEEEEcccccHHHHHHHHHcccccccEEEEEEEEccccEEEEEEEEccHHHHHHHHHHcccEEEEEEEEEEccEEccccccccEEEccHHHHHHHHHHHccc //