[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermus thermophilus HB27 (tthe0)
Gene : AAS82153.1
DDBJ      :             cold shock protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  680/915 : Eukaryota  72/199 : Viruses  1/175   --->[See Alignment]
b.40.4
:85 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->78 1hzaA PDBj 2e-21 65.6 %
:RPS:PDB   13->80 1c9oA PDBj 4e-20 62.1 %
:RPS:SCOP  13->80 1c9oA  b.40.4.5 * 3e-20 62.1 %
:HMM:SCOP  13->81 2es2A1 b.40.4.5 * 4.9e-23 52.2 %
:RPS:PFM   16->80 PF00313 * CSD 4e-13 61.9 %
:HMM:PFM   13->79 PF00313 * CSD 7.2e-30 56.9 65/67  
:BLT:SWISS 13->77 CSPA_LISMO 5e-21 66.7 %
:PROS 27->45|PS00352|COLD_SHOCK

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS82153.1 GT:GENE AAS82153.1 GT:PRODUCT cold shock protein GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1720514..1720771) GB:FROM 1720514 GB:TO 1720771 GB:DIRECTION - GB:PRODUCT cold shock protein GB:PROTEIN_ID AAS82153.1 GB:DB_XREF GI:46197741 LENGTH 85 SQ:AASEQ MRALGPGERRSGMQKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPARR GT:EXON 1|1-85:0| BL:SWS:NREP 1 BL:SWS:REP 13->77|CSPA_LISMO|5e-21|66.7|63/66| PROS 27->45|PS00352|COLD_SHOCK|PDOC00304| BL:PDB:NREP 1 BL:PDB:REP 13->78|1hzaA|2e-21|65.6|64/67| RP:PDB:NREP 1 RP:PDB:REP 13->80|1c9oA|4e-20|62.1|66/66| RP:PFM:NREP 1 RP:PFM:REP 16->80|PF00313|4e-13|61.9|63/67|CSD| HM:PFM:NREP 1 HM:PFM:REP 13->79|PF00313|7.2e-30|56.9|65/67|CSD| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00313|IPR002059| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00313|IPR002059| RP:SCP:NREP 1 RP:SCP:REP 13->80|1c9oA|3e-20|62.1|66/66|b.40.4.5| HM:SCP:REP 13->81|2es2A1|4.9e-23|52.2|67/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 2350 OP:NHOMOORG 755 OP:PATTERN ------------------------------------------------------------------11 553-621333312113311-142223111112333345742334422-1223354212--442-54687611-11---1-21411122-------------1--1--211-----------------1-1-211-------------1-----------------------------------32122--2123666666666666676213333667211436233333365-33333333333332222236-213311-1-4311334211112561111111--------------1111111111111-11212111312222222322312-1445211-5-1-2-11--11241-3421111121121-222311111318456433433422222222222-44364333343133324344334511--221554354332222222223333212------------1111111111111-1--22132155555666566533324467444434557486412444-11--------3212323231111111224233-4526-----1----666334653555561551-------------------1---1113433564349B433333332332333333411-121311122245445637557755-66-568555577557755765645444555555544544455555575545555319747876576881122-----66652454622112211111---23422423334445555666656666555522222222224448444444444433333333332222115-----------------11-11----1--------1-------2311122222--- --------------1-------1---------------------------1----------------------------------------------------11---5--3213121-111317A1625J3-519-1-28--321212-4-14-42-11221821--1--2421---1A211123144-2432----1 ---------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 91.8 SQ:SECSTR ###HHHHHTTTccEEEEEEEEETTTTEEEEEETTEEEEEEEGGGccccccccccTTcEEEEEEEEETcTTEEEEEEEEEcT#### DISOP:02AL 1-14, 83-85| PSIPRED ccccccccHHccccccEEEEEEccccEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEEcccccccEEEEEEEEccccc //