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Thermus thermophilus HB27 (tthe0)
Gene : AAS82166.1
DDBJ      :             SSU ribosomal protein S1P
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  881/915 : Eukaryota  137/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:536 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->102 2k4kA PDBj 4e-07 37.1 %
:BLT:PDB   116->202 1yz6A PDBj 4e-08 36.8 %
:BLT:PDB   227->277 2pmzE PDBj 1e-06 49.0 %
:BLT:PDB   287->367 2k4kA PDBj 1e-11 41.2 %
:BLT:PDB   380->439 2oceA PDBj 3e-11 48.3 %
:RPS:PDB   27->193 2a1aA PDBj 3e-14 14.8 %
:RPS:PDB   234->437 2ba0B PDBj 6e-31 20.4 %
:RPS:SCOP  30->105 1sroA  b.40.4.5 * 9e-13 36.8 %
:RPS:SCOP  119->188 1sroA  b.40.4.5 * 1e-08 28.8 %
:RPS:SCOP  191->279 2oceA4  b.40.4.5 * 6e-13 27.8 %
:RPS:SCOP  290->372 2ba0A1  b.40.4.5 * 5e-19 26.8 %
:RPS:SCOP  359->439 1jjgA  b.40.4.5 * 2e-16 12.3 %
:HMM:SCOP  11->130 1wi5A_ b.40.4.5 * 8.5e-27 39.0 %
:HMM:SCOP  119->202 1go3E1 b.40.4.5 * 3e-19 33.3 %
:HMM:SCOP  203->302 1wi5A_ b.40.4.5 * 2.4e-31 52.0 %
:HMM:SCOP  280->365 1q46A2 b.40.4.5 * 5.8e-27 50.6 %
:HMM:SCOP  359->456 1wi5A_ b.40.4.5 * 1.4e-30 47.4 %
:RPS:PFM   33->102 PF00575 * S1 6e-07 41.4 %
:RPS:PFM   293->361 PF00575 * S1 7e-10 46.4 %
:RPS:PFM   381->439 PF00575 * S1 4e-11 49.2 %
:HMM:PFM   30->104 PF00575 * S1 2.1e-16 38.4 73/74  
:HMM:PFM   119->188 PF00575 * S1 4.7e-13 34.3 70/74  
:HMM:PFM   206->277 PF00575 * S1 2.5e-25 48.6 72/74  
:HMM:PFM   291->364 PF00575 * S1 3.1e-23 46.6 73/74  
:HMM:PFM   378->450 PF00575 * S1 2.6e-24 45.2 73/74  
:BLT:SWISS 17->428 RS1_RHIME 9e-89 39.0 %
:REPEAT 5|9->94|95->160|178->266|267->353|354->440
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS82166.1 GT:GENE AAS82166.1 GT:PRODUCT SSU ribosomal protein S1P GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 1729689..1731299 GB:FROM 1729689 GB:TO 1731299 GB:DIRECTION + GB:PRODUCT SSU ribosomal protein S1P GB:PROTEIN_ID AAS82166.1 GB:DB_XREF GI:46197754 LENGTH 536 SQ:AASEQ MEDKATQTPEQTFSMEAALQETEARLEKRVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNQLTTKPLSEEELRNLLSPGDEVKVQVLRVDPETGQILLSRKKIEAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAELDGIQGFMPASQLDLRRVPNLDEFVGQQVLAKIIEFHRRKGRVILSRRAVLEEEQKKAREAFLKSLEPGQVVEGTVVEVTDFGVFVNLGPVDGLVHRSEITWGRFNHPREVIQKGQKVKAQVLSVDPEKERVNLSIKALIPDPWTTVAEKYPVGTRVRGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLDPEERRLSLGLKQTQPDPWQQLTEKYPPGTVLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKGDEMEVVVLNIDPVEQRVSLSRKRLLPPPLPQEEERPRRARSGKERARRKGAPRREDRREYEYGAVAEYNLYDASSVPTTTATVKLGDLYGDLLASLGLEEEAEEKSRG GT:EXON 1|1-536:0| BL:SWS:NREP 1 BL:SWS:REP 17->428|RS1_RHIME|9e-89|39.0|405/568| NREPEAT 1 REPEAT 5|9->94|95->160|178->266|267->353|354->440| SEG 211->226|vvegtvvevtdfgvfv| SEG 444->478|rvslsrkrllppplpqeeerprrarsgkerarrkg| SEG 520->532|llaslgleeeaee| BL:PDB:NREP 5 BL:PDB:REP 33->102|2k4kA|4e-07|37.1|68/130| BL:PDB:REP 116->202|1yz6A|4e-08|36.8|87/261| BL:PDB:REP 227->277|2pmzE|1e-06|49.0|51/176| BL:PDB:REP 287->367|2k4kA|1e-11|41.2|80/130| BL:PDB:REP 380->439|2oceA|3e-11|48.3|60/729| RP:PDB:NREP 2 RP:PDB:REP 27->193|2a1aA|3e-14|14.8|151/161| RP:PDB:REP 234->437|2ba0B|6e-31|20.4|196/222| RP:PFM:NREP 3 RP:PFM:REP 33->102|PF00575|6e-07|41.4|68/74|S1| RP:PFM:REP 293->361|PF00575|7e-10|46.4|68/74|S1| RP:PFM:REP 381->439|PF00575|4e-11|49.2|59/74|S1| HM:PFM:NREP 5 HM:PFM:REP 30->104|PF00575|2.1e-16|38.4|73/74|S1| HM:PFM:REP 119->188|PF00575|4.7e-13|34.3|70/74|S1| HM:PFM:REP 206->277|PF00575|2.5e-25|48.6|72/74|S1| HM:PFM:REP 291->364|PF00575|3.1e-23|46.6|73/74|S1| HM:PFM:REP 378->450|PF00575|2.6e-24|45.2|73/74|S1| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 5 RP:SCP:REP 30->105|1sroA|9e-13|36.8|73/76|b.40.4.5| RP:SCP:REP 119->188|1sroA|1e-08|28.8|69/76|b.40.4.5| RP:SCP:REP 191->279|2oceA4|6e-13|27.8|89/94|b.40.4.5| RP:SCP:REP 290->372|2ba0A1|5e-19|26.8|82/83|b.40.4.5| RP:SCP:REP 359->439|1jjgA|2e-16|12.3|81/102|b.40.4.5| HM:SCP:REP 11->130|1wi5A_|8.5e-27|39.0|118/0|b.40.4.5|1/5|Nucleic acid-binding proteins| HM:SCP:REP 119->202|1go3E1|3e-19|33.3|84/0|b.40.4.5|2/5|Nucleic acid-binding proteins| HM:SCP:REP 203->302|1wi5A_|2.4e-31|52.0|100/0|b.40.4.5|3/5|Nucleic acid-binding proteins| HM:SCP:REP 280->365|1q46A2|5.8e-27|50.6|85/0|b.40.4.5|4/5|Nucleic acid-binding proteins| HM:SCP:REP 359->456|1wi5A_|1.4e-30|47.4|97/0|b.40.4.5|5/5|Nucleic acid-binding proteins| OP:NHOMO 1527 OP:NHOMOORG 1018 OP:PATTERN -------------------------------------------------------------------- 1222111111111111111-111111111111111111111111111111111111111111111111121111111111111211112222111121112111121112222222222211112111111111115554411-41222222222222222222211223222222222222212111112113222222223222222313313222222332123333211222222222222222232221111221111111112111111-1111111111111111111111111111111111111121111111114232333334334312444222232312112122222231132221112222111121111111111111111111111111111-111111111111111111111111111111122222112111111111111112111111111111111111111111-1111112212111111111111111111111111111111111111111112111111111111211111111111111111312331222322221444233323333343221111111111111111111111121111112322222211111112111121221121-1122111111122122222222222222-22222222122222222222221133222222222222222222222222211211111111111211222222111112311111111111-212112222222111213333222222222312211111111111111222221112211222222222222211222333311111111111-------------------------1111111-11111 --------------111--11111111111111111111111-11111111111111111111-11111111111-1-1111111111-12111111111----1--13-2-1122--1-111-221111711112---11-1421111-2----1-----------------111221H353144224-45122--12 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 440 STR:RPRED 82.1 SQ:SECSTR HHHHHHHHHHHHHHHHHTccccccccEEEEEcccTTcEEEEEEcTTccEEEccccEEEEcccTTTccHHHHHHHHHHHHcTTcHHHHHHHHTTccEEEEEccTTHHHHHHHHHHHHHHcGTGGccEEEEEccTTHHHHHTcHHHHHHcTTccHHHHHHHHHHHHHHHHcHHHHHTTccGGGccccTTTTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHcEETEcTTcEEEccGGGccTTEEEETTEEEEcccEEEEEccccEEEEcccEEEEEcccccccccccEEEEEEEEccTTEEEEEccccccEEEEGGGcTTccTTccHHHHccTTcEEEEEEEEEccTTccEEEEccccccEEEcccEEEEccGGGGGGHHHHHHHHHHTcEEEEcTTcEEEEEccHHHHHHHHHHHHHHHHccccTTHHEET################################################################################################ DISOP:02AL 1-5, 8-11, 451-512, 526-536| PSIPRED ccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEcccccccEEEHHHHcccccccHHHccccccccEEEEEEEEEcccccEEEEEHHHHHccHHHHHHHHHHHHcEEEEEEEEEEccccEEEEccccHHHccHHHHHcccccccHHHcccEEEEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEcccccEEEHHHHHHHHHcccHHHHccccEEEEEEEEEcccccEEHHHHHHHHHcccHHHHccccccEEEEEEEEEcccccEEEEEccccEEEEEHHHcccccccccHHHHEEcccEEEEEEEEEcccccEEEEEcccccccHHHHHHHccccccEEEEEEEEEEEEEEEEEEccccEEEEEcccccccccccHHHHcccccEEEEEEEEEEccccEEEEEHHHcccccHHHHHHHHccccccccHHHHccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHcccccc //