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Thermus thermophilus HB27 (tthe0)
Gene : ccmF
DDBJ      :ccmF         cytochrome C-type biogenesis protein ccmF
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  379/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
:643 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   164->273 PF01578 * Cytochrom_C_asm 1e-10 41.1 %
:RPS:PFM   548->610 PF04856 * Securin 4e-05 40.7 %
:HMM:PFM   90->295 PF01578 * Cytochrom_C_asm 1.2e-33 28.4 190/214  
:HMM:PFM   301->330 PF11293 * DUF3094 0.00022 40.0 30/55  
:BLT:SWISS 64->629 CCMF_HAEIN 1e-57 34.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81380.1 GT:GENE ccmF GT:PRODUCT cytochrome C-type biogenesis protein ccmF GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1012702..1014633) GB:FROM 1012702 GB:TO 1014633 GB:DIRECTION - GB:GENE ccmF GB:PRODUCT cytochrome C-type biogenesis protein ccmF GB:PROTEIN_ID AAS81380.1 GB:DB_XREF GI:46196965 GB:GENE:GENE ccmF LENGTH 643 SQ:AASEQ MTPALLGNLGVSLALAFSLLGLGLALLAYLQGDGRFLRGARALVFPAFLAALAAFLALEWALLVHDFSLAYVARNHSTKDPLWVTLVTPWAALEGSILLWGLLQTLYTLLASRKPLDPWRASLVLAVLFGIQVFFFGVMATIASPFETLPDPPPDGVGPNPLLQNHWMMAVHPVLMYLGFVGLSVPYAYAVAAMATRRYQTWVEETRWWTLIAWGFLTAGKVAGMWWSYEVLGWGGYWAWDPVENASFIPWLLATAFLHTAFVQQTRGAFKTWNFAFVTLAFAATLLGTFLTRSGIIQSVHAFAEGPVGPAFLGFFLFATGLGLGLLSRVSREVRDAALFHPLSREGALLLGAFFFAGWALVVVLGTFYPLLVEAFTGAKVSVGAPFFNQVSAPLGAGILLLMGVGPLLPWRRARGEVLRNLLVLLLALALGTLFGLLRGYTLGASFALGLFLYNAAAIYLLAREGVLARVRAGLSPWGFLANRRRVGSLVVHFAVALMGLAIAFSQTYRLESEKTLYRGEAWEVGGVRMTFQGVRALDEGRRFAVEALLKTDRFGEVRPRLHFYPQMNSPLPAPKVIYTPGNDYYFLLMDFDREKGEWASLRLIVTPLVFWMWVAGGLMALGTLYILWPAARPEEARGVSPA GT:EXON 1|1-643:0| BL:SWS:NREP 1 BL:SWS:REP 64->629|CCMF_HAEIN|1e-57|34.6|544/648| TM:NTM 13 TM:REGION 7->29| TM:REGION 42->64| TM:REGION 86->108| TM:REGION 122->144| TM:REGION 209->231| TM:REGION 271->293| TM:REGION 309->331| TM:REGION 349->371| TM:REGION 390->411| TM:REGION 417->439| TM:REGION 449->470| TM:REGION 487->508| TM:REGION 605->627| SEG 9->32|lgvslalafsllglglallaylqg| SEG 40->63|aralvfpaflaalaaflalewall| SEG 98->110|llwgllqtlytll| SEG 149->163|lpdpppdgvgpnpll| SEG 275->292|fafvtlafaatllgtflt| SEG 306->327|gpvgpaflgfflfatglglgll| SEG 347->365|galllgafffagwalvvvl| SEG 418->439|vlrnllvlllalalgtlfgllr| RP:PFM:NREP 2 RP:PFM:REP 164->273|PF01578|1e-10|41.1|107/212|Cytochrom_C_asm| RP:PFM:REP 548->610|PF04856|4e-05|40.7|54/201|Securin| HM:PFM:NREP 2 HM:PFM:REP 90->295|PF01578|1.2e-33|28.4|190/214|Cytochrom_C_asm| HM:PFM:REP 301->330|PF11293|0.00022|40.0|30/55|DUF3094| GO:PFM:NREP 7 GO:PFM GO:0006461|"GO:protein complex assembly"|PF01578|IPR002541| GO:PFM GO:0008535|"GO:respiratory chain complex IV assembly"|PF01578|IPR002541| GO:PFM GO:0016020|"GO:membrane"|PF01578|IPR002541| GO:PFM GO:0005634|"GO:nucleus"|PF04856|IPR006940| GO:PFM GO:0005737|"GO:cytoplasm"|PF04856|IPR006940| GO:PFM GO:0006259|"GO:DNA metabolic process"|PF04856|IPR006940| GO:PFM GO:0051276|"GO:chromosome organization"|PF04856|IPR006940| OP:NHOMO 526 OP:NHOMOORG 394 OP:PATTERN 11-1-1------------1----11------1-----------------11-1--------------- 1111----------------------------------------------------------1----------------111-----------------------11111------------------------1-11111---11-------------------------------------11111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1--------1--111111111111111111111111111111111-11111111111-111121111111111113111111112111111111111111111111111111111-11111111111111111111-11-2----------------------4111221111-11----1-1---21---1-2-------121111-----2111111121-------------11-----------------------------22-121111111122111222222222222---1111------21--2-12222222222-222222222222222222111122---323333333333333312212222--111111111111---1-----1111111-1222222222212112-------1211111111111111111111----------2222111112222211222222231111111-111111------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1-11---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 638-643| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHEEEEEccccEEEEccEEEEEEccEEccccccEEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHcccccEEEEEEcccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccc //