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Thermus thermophilus HB27 (tthe0)
Gene : greA.1
DDBJ      :greA         transcription elongation factor greA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  849/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.2.1d.26.1
:155 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   35->152 2etnB PDBj 1e-21 44.1 %
:RPS:PDB   27->152 3bmbA PDBj 1e-23 25.4 %
:RPS:SCOP  3->77 1grjA1  a.2.1.1 * 2e-20 41.3 %
:RPS:SCOP  79->152 2etnA2  d.26.1.2 * 1e-17 45.9 %
:HMM:SCOP  3->80 1grjA1 a.2.1.1 * 8.2e-23 43.6 %
:HMM:SCOP  78->155 1grjA2 d.26.1.2 * 4.2e-18 43.6 %
:RPS:PFM   6->75 PF03449 * GreA_GreB_N 6e-09 48.6 %
:RPS:PFM   82->153 PF01272 * GreA_GreB 4e-09 52.8 %
:HMM:PFM   1->75 PF03449 * GreA_GreB_N 1.1e-29 48.6 74/74  
:HMM:PFM   82->153 PF01272 * GreA_GreB 1.2e-26 52.8 72/77  
:BLT:SWISS 3->152 GREA_CLOB8 6e-30 47.3 %
:PROS 118->134|PS00830|GREAB_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS80605.1 GT:GENE greA.1 GT:PRODUCT transcription elongation factor greA GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION 248179..248646 GB:FROM 248179 GB:TO 248646 GB:DIRECTION + GB:GENE greA GB:PRODUCT transcription elongation factor greA GB:PROTEIN_ID AAS80605.1 GB:DB_XREF GI:46196187 GB:GENE:GENE greA LENGTH 155 SQ:AASEQ MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNEARIAQLEDLLSRAVIVENGSFDQVALGCQVELETETGERLSLAIVGSHEADIFSGKISDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIKPL GT:EXON 1|1-155:0| BL:SWS:NREP 1 BL:SWS:REP 3->152|GREA_CLOB8|6e-30|47.3|150/160| PROS 118->134|PS00830|GREAB_2|PDOC00651| BL:PDB:NREP 1 BL:PDB:REP 35->152|2etnB|1e-21|44.1|118/155| RP:PDB:NREP 1 RP:PDB:REP 27->152|3bmbA|1e-23|25.4|118/135| RP:PFM:NREP 2 RP:PFM:REP 6->75|PF03449|6e-09|48.6|70/73|GreA_GreB_N| RP:PFM:REP 82->153|PF01272|4e-09|52.8|72/78|GreA_GreB| HM:PFM:NREP 2 HM:PFM:REP 1->75|PF03449|1.1e-29|48.6|74/74|GreA_GreB_N| HM:PFM:REP 82->153|PF01272|1.2e-26|52.8|72/77|GreA_GreB| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF03449|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF03449|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF03449|IPR001437| GO:PFM GO:0003677|"GO:DNA binding"|PF01272|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF01272|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01272|IPR001437| RP:SCP:NREP 2 RP:SCP:REP 3->77|1grjA1|2e-20|41.3|75/78|a.2.1.1| RP:SCP:REP 79->152|2etnA2|1e-17|45.9|74/79|d.26.1.2| HM:SCP:REP 3->80|1grjA1|8.2e-23|43.6|78/0|a.2.1.1|1/1|GreA transcript cleavage protein, N-terminal domain| HM:SCP:REP 78->155|1grjA2|4.2e-18|43.6|78/79|d.26.1.2|1/1|FKBP-like| OP:NHOMO 1186 OP:NHOMOORG 851 OP:PATTERN -------------------------------------------------------------------- 12211-1111111111111-11111111111111111111111111111--11111111111111111111111111111111-----111111111--11111111111111111111111111111111111111111111111-------------------------------------33222--1111111111111111111111111111111111211111112111111111111111111111222222222222222212211111111111111111111111111111111111111111111111111111222222222222111112222211122211111111111111111---11111111111121111111111111111111111111111111121111111111111111111111111111111111111122222211111111111111111111111111111112222222222222222222222222222222222222222222222112222213222223222222222222222211111111111111222222212222232121111111111111111111121111112222222222122222222222222222221-1111111111122222222222222222-22222222222222222222222222222222222222222222222222221222222212222111211111111122222222222222222222222221211122222223332222222221111111112222222222222222222222222111111111111111---1---11111111-1111111111111111---111111111112- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 152 STR:RPRED 98.1 SQ:SECSTR ccccEHHccHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHcGGGTTcHHHHHHccccccHHHHHHHTcEEEcGGGcTcccTTcEEEEEETTccEEEEEEEcGGGcccTTTEEETTcHHHHHHTTccTTcEEEEEETTTEEEEEEEEE### PSIPRED ccccEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccEEEEEEEEEEEEccccEEEEEEEcHHHcccccccEEEccHHHHHHcccccccEEEEEcccccEEEEEEEEEEc //