[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermus thermophilus HB27 (tthe0)
Gene : soxY
DDBJ      :soxY         soxY protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  58/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.1.18
:152 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   65->151 2oxgB PDBj 1e-11 42.2 %
:RPS:SCOP  56->146 1v8hA1  b.1.18.19 * 3e-09 16.5 %
:HMM:PFM   2->26 PF10518 * TAT_signal 7.2e-06 52.0 25/26  
:HMM:PFM   54->90 PF04221 * RelB 0.001 33.3 36/83  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAS81398.1 GT:GENE soxY GT:PRODUCT soxY protein GT:DATABASE GIB00176CH01 GT:ORG tthe0 GB:ACCESSION GIB00176CH01 GB:LOCATION complement(1027196..1027654) GB:FROM 1027196 GB:TO 1027654 GB:DIRECTION - GB:GENE soxY GB:PRODUCT soxY protein GB:PROTEIN_ID AAS81398.1 GB:DB_XREF GI:46196983 GB:GENE:GENE soxY LENGTH 152 SQ:AASEQ MRVDRRTFLKATGAALGALALSGLPARAQGLEGEDLEHLEQALKEVFGKGFKDLTPSDAVKLNMPAIAESGANVPAEVEVALPKEQVKAIHLFADKNPTPHILAFMPMKAEPYYATRVRLAETTAIRAVVETQDGKLLLASASTRVTVGGCG GT:EXON 1|1-152:0| SEG 9->28|lkatgaalgalalsglpara| BL:PDB:NREP 1 BL:PDB:REP 65->151|2oxgB|1e-11|42.2|83/110| HM:PFM:NREP 2 HM:PFM:REP 2->26|PF10518|7.2e-06|52.0|25/26|TAT_signal| HM:PFM:REP 54->90|PF04221|0.001|33.3|36/83|RelB| RP:SCP:NREP 1 RP:SCP:REP 56->146|1v8hA1|3e-09|16.5|91/106|b.1.18.19| OP:NHOMO 72 OP:NHOMOORG 59 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------11111--------------------------------------1-----------------------------------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3331-12-111-------------12-111------------------1-1---1-1--1-1--------1----1------------------------------------------------------------------11111111112----1----1--1121--------------2--------------------------------1-------------------1--12------------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------1-----------------1----------------------------1-2-------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 73.7 SQ:SECSTR ######################################HHHHHHHHHcc##ccEEEcccEEEEcccEEccTTcEEEEEEcTcTEcTccEEEEEETTccccEEEEEETTccccEEEEEEcccccEEEEEEEEcTTccEEEEEEEEEEcccccc PSIPRED ccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccEEEEccHHcccccEEEEEEEEccccccEEEEEEEEccccccEEEEEccccccEEEEEEEEEcccccEEEEEEEcccEEEEEEEEEEEEEEccc //