Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL64946.1
DDBJ : indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift
Swiss-Prot:
Homologs Archaea 49/68 : Bacteria 95/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
c.36.1
c.48.1
d.58.1
:390 amino acids
:SECSTR
:PSIPRED
:BLT:PDB 170->302 1umdC PDBj 7e-06 25.0 %
:BLT:PDB 329->373 2fdnA PDBj 4e-05 40.9 %
:RPS:PDB 22->59 2c3yB PDBj 2e-04 21.1 %
:RPS:PDB 148->316 3dvaE PDBj 6e-14 14.9 %
:RPS:PDB 324->377 1clfA PDBj 2e-10 34.0 %
:RPS:SCOP 22->66 1dtwB2 c.48.1.2 * 4e-04 17.8 %
:RPS:SCOP 186->297 1ni4A c.36.1.11 * 9e-12 22.0 %
:RPS:SCOP 324->377 1durA d.58.1.1 * 1e-11 34.6 %
:HMM:SCOP 5->76 1qs0B2 c.48.1.2 * 1.1e-05 31.0 %
:HMM:SCOP 143->347 2djiA3 c.36.1.9 * 2e-25 22.9 %
:HMM:SCOP 309->389 1h7wA5 d.58.1.5 * 1.2e-16 38.0 %
:RPS:PFM 187->251 PF02775 * TPP_enzyme_C 9e-06 42.9 %
:HMM:PFM 168->299 PF02775 * TPP_enzyme_C 6.4e-21 31.0 126/150
:HMM:PFM 322->336 PF00037 * Fer4 4.7e-06 46.7 15/24
:HMM:PFM 353->374 PF00037 * Fer4 1.6e-11 50.0 22/24
:HMM:PFM 21->77 PF02780 * Transketolase_C 2e-05 35.1 57/124
:BLT:SWISS 1->58,147->375 IORA_PYRAB 1e-47 48.0 %
:BLT:SWISS 354->386 FER1_CAUCR 3e-04 42.4 %
:PROS 359->370|PS00198|4FE4S_FER_1
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL64946.1
GT:GENE AAL64946.1
GT:PRODUCT indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift
GT:DATABASE GIB00076CH01
GT:ORG paer1
GB:ACCESSION GIB00076CH01
GB:LOCATION complement(2089535..2090707)
GB:FROM 2089535
GB:TO 2090707
GB:DIRECTION -
GB:PRODUCT indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift
GB:NOTE Energy metabolism; Fermentation
GB:PROTEIN_ID AAL64946.1
GB:DB_XREF GI:18161681
LENGTH 390
SQ:AASEQ MDKWRELEKLSSDFLQIEGSGDVVIVTSGVAYNYVKEAVRRLNIRATVVKLGISVPVPPKVREIARGGEVVVVEEGDPVVEIQLRALGINTRGKIDGYFPKHGELDINKTALGLAKALGLSYAPPTPLKPPLEPPPRPPVLCPGCPHMATFYILRLATAGLNPVWSGDIGCYSLGINTGQQDLITHMGSSVGLGAGIALATGQFVVATVGDSTFYHAVLPQLVDIATRSVPILIVVMDNAYTAMTGGQPSPSRAIPAERITEAFGISTFVIDPIDVKKSVEIIKKAVEIVKSGRPAVVVSRRPCALIGVRKARRAGIQLPKYQVDVNKCTGCGLCYNLLKCSAIYKRPDRKAHVDPALCVGCGICAEVCPFNAFKPEGKREAWLELWRQA
GT:EXON 1|1-390:0|
BL:SWS:NREP 2
BL:SWS:REP 1->58,147->375|IORA_PYRAB|1e-47|48.0|282/648|
BL:SWS:REP 354->386|FER1_CAUCR|3e-04|42.4|33/113|
PROS 359->370|PS00198|4FE4S_FER_1|PDOC00176|
SEG 67->81|ggevvvveegdpvve|
SEG 111->120|alglakalgl|
SEG 124->146|pptplkppleppprppvlcpgcp|
BL:PDB:NREP 2
BL:PDB:REP 170->302|1umdC|7e-06|25.0|132/361|
BL:PDB:REP 329->373|2fdnA|4e-05|40.9|44/55|
RP:PDB:NREP 3
RP:PDB:REP 22->59|2c3yB|2e-04|21.1|38/1230|
RP:PDB:REP 148->316|3dvaE|6e-14|14.9|168/354|
RP:PDB:REP 324->377|1clfA|2e-10|34.0|53/55|
RP:PFM:NREP 1
RP:PFM:REP 187->251|PF02775|9e-06|42.9|63/139|TPP_enzyme_C|
HM:PFM:NREP 4
HM:PFM:REP 168->299|PF02775|6.4e-21|31.0|126/150|TPP_enzyme_C|
HM:PFM:REP 322->336|PF00037|4.7e-06|46.7|15/24|Fer4|
HM:PFM:REP 353->374|PF00037|1.6e-11|50.0|22/24|Fer4|
HM:PFM:REP 21->77|PF02780|2e-05|35.1|57/124|Transketolase_C|
GO:PFM:NREP 2
GO:PFM GO:0003824|"GO:catalytic activity"|PF02775|IPR011766|
GO:PFM GO:0030976|"GO:thiamin pyrophosphate binding"|PF02775|IPR011766|
RP:SCP:NREP 3
RP:SCP:REP 22->66|1dtwB2|4e-04|17.8|45/138|c.48.1.2|
RP:SCP:REP 186->297|1ni4A|9e-12|22.0|109/362|c.36.1.11|
RP:SCP:REP 324->377|1durA|1e-11|34.6|52/55|d.58.1.1|
HM:SCP:REP 5->76|1qs0B2|1.1e-05|31.0|71/134|c.48.1.2|1/1|TK C-terminal domain-like|
HM:SCP:REP 143->347|2djiA3|2e-25|22.9|201/0|c.36.1.9|1/1|Thiamin diphosphate-binding fold (THDP-binding)|
HM:SCP:REP 309->389|1h7wA5|1.2e-16|38.0|79/173|d.58.1.5|1/1|4Fe-4S ferredoxins|
OP:NHOMO 193
OP:NHOMOORG 144
OP:PATTERN --2-12111111111111111111--------111---222221111112222-2222222-111--- ------------------------------------1------------------------------------------122------1111-111------------------------------1-11--11-------111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2231-----------21------1-1---1-2---1121-2121-121---3--------------1---11111----------1----------1--------------------1-------1-------------1-1--------------------------------1-----------------------------------------------1-3---1----------------111-2411111111221-2321221211111--12---------------------11---------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--11------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 282
STR:RPRED 72.3
SQ:SECSTR #####################cEEEEEccTHHHHHHHHHHHHTccEEEEEEcEEEcccH#######################################################################################cHTTTccHHHHHHHHHTcGGGGcccTTcccccccccTTHHHHHHHHHHHHHHHTccccEEEEEETGGGGcHHHHHHHHHHHTTccEEEEEEEccEETTEEGGGTcccccccGGGGGTTTccEEEEETTcHHHHHHHHHHHHHHHHTTcccEEEEEEcccccccccccccGTTTcHHHHHHHHHHTTTcccTTcTTccEEEEccccEEEcTTTcccccTTTTTcTTccccccTTccHHHHHHHHH
PSIPRED cHHHHHHHHccccccEEEccccEEEEEccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccEEEEEEccHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHcccccccHHccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccccccccccEEEEcccHHHHHHHHHHHcccEEEEEcccHHHHHccHHHHHHHHHccccEEEEEEEcHHHHcccccccccccccHHHHHcccccEEEEEccccHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHcccccccEEEEEEcccccccHHHHHcccccEEEccccEEEEccccccccccHHHHcccccEEEcccHHHHHHHHccc
//
[GTOP]
