REPEAT (org=cimm2&id=CIRT_02989)

>CIRT_02989 cimm2 CIRG_02986 Broad_Institute ""
#RepAlignM (coded by Takeshi Kawabata) LastModDate:January 19, 2002
#LENGTH        1343
#NPREPATH      1
#NNOVPATH      1
#NMULPATH      1
[MULTIPLE_REPEAT 1]
#NSEGMENT      2
#SEGMENT  1    47 ->   678 type S Sc 1166 SqID  37.0 Zsc  70.0
#SEGMENT  2   721 ->  1341 type M Sc 3862 SqID 100.0 Zsc 246.9
#ALIGNMENT
1      47:DSKLANEKRESNLDDSLAHLPEHERDIIKQQLEIPETKVKFFTLYRYATTNDIIILlvsa:  106
2     721:DEKMDLELQKTETKKSLSSVILSKREPEKDKEYGLGTLIKFISSFNAAEWK---LMVTGL:  777
         :*.*...*........**.......*...*.......*..**......*...   ......

1     107:vasiaggaalPLFTILFGQMAGTFQRIILGTISYDEFNDTLSKYALYFVYLGIAEFVLIY:  166
2     778:AVSIICGAGQPTMAVFFSKCISA---LALPPPLYDKLRSDANFWCLMFLMLGIVMFFAYS:  834
         :..........*.....*......   ..*....**..........*.*..***..*....

1     167:TCTVGFIYTGEHIAQKIRERYLDAVLRQNIAFFD--KLGAGEITTRITADTNLIQDGISE:  224
2     835:IQGSLFAYCSEKLIYRARSKAFRSMLRQDIAFFDVDENSTGALTSFLSTETKHLS-GISG:  893
         :.....*.*..*......*.......***.*****......*..*......*.... ***.

1       -:-KVGltltalatfvtafvIGFIKYWKLTLICCSTVVAIVTIMGGASRFII--RFSKKNVE:  281
2     894:VTLGTILMVTTTLAASMVVGLAIGWKLALVCISCVP--VLLACGFYRFWILAAFQRRakk:  951
         :...*...............*....***.*.*.*.*.  *....*..**.*...*......

1     282:SYGEGGTVAEEVLSSIRNATAFGTQEKLAKQYDAHLLEAQKWGTKLQMTIGIMVGGMMSI:  341
2     952:ayeasasyaceatsaIRTVASLTREPDVSGTYHGQLVVQGKKSLVSILKSSTLYAASQSF: 1011
         :...............**..............*...*....*.................*.

1     342:VFLNYGLGFWMGSRFIVSGetelaniitillaiiiGSFSLGNVTPNAQAFTSAIAAGAKI:  401
2    1012:MFFVLALGFWYGGTLLGKGEYTLFQFFLAFSEVIFGAQSAGTVFSFAPDMGKAKSAAADF: 1071
         :.*....****.*......*................*..*.*.*...*.....*..*.*..

1     402:FSTIDRKSPIDPTSEDGETLEKVEGNIEFRDIRHIYPSRPEVLVMKGVNLFVPAGKTTAL:  461
2    1072:KKLFDRRPPIDTLSKEGDDVEHIEGTIEFRDVHFRYPTRPEQPVLRGLNLSVKPGQYVAL: 1131
         :....**..***..*..*...*..**.*****....**.***..*..*.**.*..*...**

1     462:VGPSGSGKSTVIGLLERFYNPVGGSVLVDGVDIQNLNLKWLRQQISLVSQEPTLFGTTIY:  521
2    1132:VGPSGCGKSTTIALLERFYDTLSGGVYVDGTDITRWNVSAYRSFLALVSQEPTLYQGSIR: 1191
         :*****.****.*.******....*.*.***.**...*....*....********....*.

1     522:NNIKQGLIGSPFELEPDQSVRQRIENAAKMANAHDFIMGLPEKYETHVGERGFLLSGGQK:  581
2    1192:DNI---LLGITEDDVPEEAI---IE-ACKAANIYDFIMSLPDGFSTLVGSKGSMLSGGQK: 1244
         :.**   *.*......*....   ** *.*.**..****.**....*.**..*..******

1     582:QRIAIARAIVSDPKILLLDEATSALDTKSEGVVQAALDEASKGRTTIIIAHRLSTIKTAD:  641
2    1245:QRIAIARALIRDPKILLLDEATSALDSESEKVVQVALDAAAKGRTTIAVAHRLSTIQKAD: 1304
         :********...***************..**.***.***.*.******..*******..**

1     642:NIVVLVDGRIVEQGTHDELVERDGTYLRLVEAQRINE:  678
2    1305:VIYVFDQGRITESGTHSELLAKKGRYYELVHMQSLGK: 1341
         :.*.*...***.*.***.**....*.*..**..*....


[MULTIPLE_REPEATS_SYMBOLIC_OUTPUT]
  :  + :  +  : +  : +  :  * :  + :  +  : +  : +  :  ! :  + :  +  : +  |1343 aa
 111111111111111111111111111111111   22222222222222222222222222222222 |#1|2 seg
//