REPEAT (org=elen0&id=ACV55454.1)

>ACV55454.1 elen0 ACV55454.1 GIB01015CH01 "ABC transporter related"
#RepAlignM (coded by Takeshi Kawabata) LastModDate:January 19, 2002
#LENGTH        1228
#NPREPATH      1
#NNOVPATH      1
#NMULPATH      1
[MULTIPLE_REPEAT 1]
#NSEGMENT      2
#SEGMENT  1     3 ->   612 type S Sc  847 SqID  32.5 Zsc  50.3
#SEGMENT  2   631 ->  1225 type M Sc 3821 SqID 100.0 Zsc 249.4
#ALIGNMENT
1       3:KESKGRKPGALSRCLRFAGRRKPlvfasmalavlsaaasfvPYVAIYFMIRDAVGVYPNL:   62
2     631:KPSSGRAPW-LQRTFNLSDEGYVGLKRSAIACTLSDLALMIPFVCTVAAFAALVGTLAG-:   -
         :*.*.**.*. *.*............................*.*.........**.... 

1      63:AAVDVSAMTGYAGLAVAGIVVDVGCYLAALLCSHAAAFDAQYRTKLDIAAHLGRIPLGHI:  122
2     689:EPFDAAALWSIFAVGLAGMVVVFVASRNDYKKTYVAAYTESEGTRLRLADHLRKLPMSFF:  748
         :...*..*.........**.**..............**......*.*..*.**...*....

1     123:ARLGTGRISKVMDESVGGIEQFIGHSIPDlaataaapvvlaallFVFDWRFGvatlaava:  182
2     749:NRRDTTDVADRIMGDVTAQESMLSSTLPQLIAGIVSTVVICAMLAFFDWRLACCVMVTLP:  808
         :.*..*..........*...*.......*..................****..........

1     183:vac-vvQFSGYADKRVMASMGRYQEVKEQMGNASVEYVRGMRVVKAFGQTARSFKRLSDA:  241
2     809:LSAGVIALSRRHQSRLFERQNRVRLDALACVQDYLEGIKDMRACRAVGKDSAAMEQ---A:  865
         :........*.....*......*.............*....**...*.*........   *

1     242:IKDYTGLSLDVTLFFRNSMPGFTAVLNNAYLFVLPVG-ILLAPGAQDWPTfvlslvfyll:  300
2     866:MLELKRVTMRVELAVDVSVSLASAILRSGVGLTACVGAVLLASGGVDFMVLLMFLLI---:   -
         :..........*.*....*.....*.*.........**..***.*..*..........   

1     301:fvHSISSVFTKIL-YVSE-DGMLA-QANIDRIDSVLGIEELSCPEAPKAPKDASVSLRDV:  357
2       -:----VSRVYGPILALVSQLPNLLNLSTKTARIKAVMDEPEARGSASADVPGH-DLSFQGV:  977
         :    .*.*...**..**.....*.......**..*....*.........*.. ..*...*

1     358:TFSYEDDAEPALRNVSLEIPAGTVCAVVGPSGSGKSTLANLVARFWDVDSGQVLVGGVDV:  417
2     978:RFGYGD--EEVLHGVSFVAREGEVTALVGPSGSGKSTCAQLAAKFWEPDSGRVLCSGKDI: 1035
         :.*.*.*  *..*..**.....*.*.*.**********.*.*.*.**..***.**..*.*.

1     418:REMGQDELMGSLSLVFQDSHLFRESVAENIRRGRPGatddevveaakaaqadaFINGLPH:  477
2    1036:AEFSEESWLAHVSIVFQDVVLFDDTVANNIRIGREGASDEEVAEAARAAHCLEFIERLPQ: 1095
         :.*..........*.****..**...**.***.**.*.................**..**.

1     478:GYATVIGSEGVHLSGGEqqriaiarsiisDAPIVVLDEATAFSDPENEHLIQKAFERLMA:  537
2    1096:GFDTVLGENGASLSGGERQRLSIARALLKDAPVVLLDEATASLDPENETLIQRAVGTLCA: 1155
         :*..**.*..*..*****............***.*.******..*****.***.*...*.*

1     538:GKTVIMVAHRLSTVVGADKIVVLDGGRKVEEGTHQELLAASGTYAKMWRQYTEAVEWGIE:  597
2    1156:GKTVIVIAHRLRTVANADKIVVLDSGRVAEEGNHKTLLAEDGLYARLWRLQQESSSWTV-:   -
         :*****..****.**..********.**..***.*..***..*.**..**...*...*.. 

1     598:AAPRDDTRSSEATAP:  612
2       -:--PAD--RGDAADVP: 1225
         :  *.*  *...*..*


[MULTIPLE_REPEATS_SYMBOLIC_OUTPUT]
  :  +  :  +  :  + :  +  :  *  :  +  : +  :  +  :  +  :  ! :  +  :  + |1228 aa
1111111111111111111111111111111111 2222222222222222222222222222222222 |#1|2 seg
//