GTOP:Links
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REFERENCES
Constructor of GTOP
Laboratory for Gene-Product Informatics,
Center for Information Biology,
National Institute of Genetics
GTOP is linked with following databases
GenoBase
PEC
Genome Information Broker
HUGE database
Genomic Sequence Data
ftp://ncbi.nlm.nih.gov/genbank/genomes/
NCBI-Genomics
TIGR(Institute for Genome Research)
E.coli(U.Wisconsin/Blatnner)
E.coli(Aist-Nara/Mori)
Stanford Genomic Resource
CyanoBase,HUGE (Kazusa)
Human, C.elegans(Sanger Centre)
E.coli Index
Completing the E.coli proteome(recently characterised genes)
Flybase
Analysis (General)
COG(Cluster of Orthologous Groups)
GeneQuiz(EBI)
KEGG encycropedia
Ontology
Gene Ontology Consortium
Assigning 3D structure
PEDANT
GeneCensus(Gerstein)
Genome Fold Assignment (Jones group)
Genome threading with 123D
ModBase (Sali group)
Sacch3D (Stanford)
Ana. of Bacterial Genome(Chothia group)
Fold recognition by PSI-BLAST(Koonin)
Predict 3D structures by PSI-BLAST(Bork)
PRESAGE
Genius1.2(Helix research institute,JAPAN)
Homology Modelling
FAMS
SWISS-MODEL
MODELLER
Fold Recoginition
GenTHREADER/PSIpred
FUGUE
3D-pssm
bioinbgu
Secondary Structure Prediction
PredictProtein
PsiPred
Structural Genomics
NIGMS -Structural Genomics Initiaives
in the post-genomic sequence era
Family/Profile database
Pfam
PROSITE
SMART
CD-Search
InterPro
TIGRFAMs
SuperFamily
Structure Database
PDB
SCOP
CATH
FSSP
FSSP ftp site
Structure Comparison
MATRAS
Protein Sequence Database
Swiss-prot
PIR
ProDom
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