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[ARCHAEA]
Desulfurococcus kamchatkensis 1221n
Halorubrum lacusprofundi ATCC 49239
Halomicrobium mukohataei DSM 12286
Halorhabdus utahensis DSM 12940
Candidatus Korarchaeum cryptofilum OPF8
Methanocaldococcus fervens AG86
Candidatus Methanosphaerula palustris E1-9c
Sulfolobus islandicus L.S.2.15
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Thermococcus gammatolerans EJ3
Thermoproteus neutrophilus V24Sta
Thermococcus onnurineus NA1
Thermococcus sibiricus MM 739
[BACTERIA] Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Aggregatibacter aphrophilus NJ8700
Candidatus Amoebophilus asiaticus 5a2
Acinetobacter baumannii AB307-0294
Acinetobacter baumannii ACICU
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii
Acinetobacter baumannii
Acidobacterium capsulatum ATCC 51196
Arthrobacter chlorophenolicus A6
Anaeromyxobacter dehalogenans 2CP-C
Acidithiobacillus ferrooxidans ATCC 23270
Acidithiobacillus ferrooxidans ATCC 53993
Acidimicrobium ferrooxidans DSM 10331
Anoxybacillus flavithermus WK1
Alteromonas macleodii 'Deep ecotype'
Anaplasma marginale str. Florida
Actinosynnema mirum DSM 43827
Akkermansia muciniphila ATCC BAA-835
Anaeromyxobacter sp. K
Atopobium parvulum DSM 20469
Acetobacter pasteurianus IFO 3283-01
Acetobacter pasteurianus IFO 3283-01-42C
Acetobacter pasteurianus IFO 3283-03
Acetobacter pasteurianus IFO 3283-07
Acetobacter pasteurianus IFO 3283-12
Acetobacter pasteurianus IFO 3283-22
Acetobacter pasteurianus IFO 3283-26
Acetobacter pasteurianus IFO 3283-32
Candidatus Accumulibacter phosphatis clade IIA str. UW-1
Actinobacillus pleuropneumoniae L20
Anaerococcus prevotii DSM 20548
Agrobacterium radiobacter K84
Aliivibrio salmonicida LFI1238
Anaerocellum thermophilum DSM 6725
Azotobacter vinelandii DJ
Agrobacterium vitis S4
Brucella abortus S19
Burkholderia ambifaria MC40-6
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium animalis subsp. lactis Bl-04
Bifidobacterium animalis subsp. lactis DSM 10140
Bacillus anthracis str. A0248
Bacillus anthracis str. CDC 684
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)
Brevibacillus brevis NBRC 100599
Borrelia burgdorferi ZS7
Beutenbergia cavernae DSM 12333
Burkholderia cenocepacia J2315
Burkholderia cenocepacia MC0-3
Bacillus cereus 03BB102
Bacillus cereus AH187
Bacillus cereus AH820
Bacillus cereus B4264
Bacillus cereus G9842
Bacillus cereus Q1
Borrelia duttonii Ly
Brachybacterium faecium DSM 4810
Burkholderia glumae BGR1
Bartonella grahamii as4aup
Borrelia hermsii DAH
Brachyspira hyodysenteriae WA1
Beijerinckia indica subsp. indica ATCC 9039
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium longum NCC2705
Brucella melitensis ATCC 23457
Brucella microti CCM 4915
Burkholderia multivorans ATCC 17616
Burkholderia phytofirmans PsJN
Burkholderia phymatum STM815
Burkholderia pseudomallei MSHR346
Borrelia recurrentis A1
Catenulispora acidiphila DSM 44928
Chloroflexus aggregans DSM 9485
Chloroflexus aurantiacus J-10-fl
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Clostridium botulinum A2 str. Kyoto
Clostridium botulinum A3 str. Loch Maree
Clostridium botulinum B1 str. Okra
Clostridium botulinum B str. Eklund 17B
Clostridium botulinum Ba4 str. 657
Clostridium botulinum E3 str. Alaska E43
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154
Clostridium cellulolyticum H10
Caulobacter crescentus NA1000
Cryptobacterium curtum DSM 15641
Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Chloroflexus sp. Y-400-fl
Candidatus Hodgkinia cicadicola Dsem
Cellvibrio japonicus Ueda107
Clostridium kluyveri NBRC 12016
Corynebacterium kroppenstedtii DSM 44385
Campylobacter lari RM2100
Candidatus Liberibacter asiaticus str. psy62
Chlorobium limicola DSM 245
Capnocytophaga ochracea DSM 7271
Chlorobaculum parvum NCIB 8327
Chlorobium phaeobacteroides BS1
Candidatus Phytoplasma australiense
Chitinophaga pinensis DSM 2588
Coprothermobacter proteolyticus DSM 5265
Cupriavidus taiwanensis
Chloroherpeton thalassium ATCC 35110
Chlamydia trachomatis B/Jali20/OT
Chlamydia trachomatis L2b/UCH-1/proctitis
Corynebacterium urealyticum DSM 7109
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 8802
Desulfotomaculum acetoxidans DSM 771
Desulfatibacillum alkenivorans AK-01
Candidatus Desulforudis audaxviator MP104C
Desulfobacterium autotrophicum HRM2
Desulfomicrobium baculatum DSM 4028
Dickeya dadantii Ech703
Deinococcus deserti VCD115
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Dyadobacter fermentans DSM 18053
Desulfitobacterium hafniense DCB-2
Diaphorobacter sp. TPSY
Desulfovibrio magneticus RS-1
Desulfohalobium retbaense DSM 5692
Desulfovibrio salexigens DSM 2638
Dictyoglomus thermophilum H-6-12
Dictyoglomus turgidum DSM 6724
Desulfovibrio vulgaris str. 'Miyazaki F'
Dickeya zeae Ech1591
Escherichia coli O157:H7 str. EC4115
Escherichia coli ATCC 8739
Escherichia coli str. K12 substr. DH10B
Escherichia coli SE11
Escherichia coli SMS-3-5
Escherichia coli O127:H6 str. E2348/69
Escherichia coli ED1a
Escherichia coli IAI1
Escherichia coli IAI39
Escherichia coli 55989
Escherichia coli O157:H7 str. TW14359
Escherichia coli S88
Escherichia coli UMN026
Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3)
Escherichia coli BW2952
Escherichia coli B str. REL606
Escherichia coli BL21(DE3)
Eubacterium eligens ATCC 27750
Escherichia fergusonii ATCC 35469
Edwardsiella ictaluri 93-146
Eggerthella lenta DSM 2243
Elusimicrobium minutum Pei191
Eubacterium rectale ATCC 33656
Exiguobacterium sibiricum 255-15
Erwinia tasmaniensis
Exiguobacterium sp. AT1b
Francisella tularensis subsp. tularensis FSC198
Gemmatimonas aurantiaca T-27
Geobacter bemidjiensis Bem
Gluconacetobacter diazotrophicus PAl 5
Geobacter sp. FRC-32
Geobacter sp. M21
Geobacillus sp. WCH70
Geobacter lovleyi SZ
Hirschia baltica ATCC 49814
Halothermothrix orenii H 168
Haemophilus parasuis SH0165
Helicobacter pylori HPAG1
Helicobacter pylori Shi470
Helicobacter pylori B38
Helicobacter pylori P12
Haemophilus somnus 2336
Hydrogenobaculum sp. Y04AAS1
Jonesia denitrificans DSM 20603
Kangiella koreensis DSM 16069
Kosmotoga olearia TBF 19.5.1
Klebsiella pneumoniae 342
Klebsiella pneumoniae NTUH-K2044
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leptotrichia buccalis DSM 1135
Lactobacillus casei BL23
Leptothrix cholodnii SP-6
Leuconostoc citreum KM20
Lactobacillus fermentum IFO 3956
Laribacter hongkongensis HLHK9
Listeria monocytogenes
Listeria monocytogenes HCC23
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus rhamnosus Lc 705
Lysinibacillus sphaericus C3-41
Mycobacterium abscessus
Mycoplasma arthritidis 158L3-1
Mycobacterium bovis BCG
Mycobacterium bovis BCG str. Tokyo 172
Macrococcus caseolyticus JCSC5402
Methylobacterium chloromethanicum CM4
Mycoplasma conjunctivae
Methylobacterium extorquens DM4
Methylovorus sp. SIP3-4
Methylobacterium extorquens AM1
Mycoplasma fermentans PG18
Methylacidiphilum infernorum V4
Mycobacterium leprae Br4923
Micrococcus luteus NCTC 2665
Mycobacterium marinum M
Methylotenera mobilis JLW8
Methylobacterium nodulans ORS 2060
Methylobacterium populi BJ001
Methylobacterium radiotolerans JCM 2831
Methylocella silvestris BL2
Mycobacterium tuberculosis KZN 1435
Nitrosomonas eutropha C91
Neisseria gonorrhoeae NCCP11945
Neisseria meningitidis
Nautilia profundicola AmH
Nostoc punctiforme PCC 73102
Neorickettsia risticii str. Illinois
Natranaerobius thermophilus JW/NM-WN-LF
Oligotropha carboxidovorans OM5
Opitutus terrae PB90-1
Orientia tsutsugamushi str. Ikeda
Onion yellows phytoplasma OY-M
Paenibacillus sp. JDR-2
Pseudomonas aeruginosa LESB58
Prosthecochloris aestuarii DSM 271
Photorhabdus asymbiotica
Pectobacterium carotovorum subsp. carotovorum PC1
Pseudomonas fluorescens SBW25
Porphyromonas gingivalis ATCC 33277
Pedobacter heparinus DSM 2366
Candidatus Phytoplasma mali
Persephonella marina EX-H1
Proteus mirabilis
Polynucleobacter necessarius subsp. necessarius STIR1
Pelodictyon phaeoclathratiforme BU-1
Pseudomonas putida W619
Chlorobium phaeovibrioides DSM 265
Phenylobacterium zucineum HLK1
Rickettsia africae ESF-5
Robiginitalea biformata HTCC2501
Rhodospirillum centenum SW
Rhodococcus erythropolis PR4
Rhizobium etli CIAT 652
Rhizobium sp. NGR234
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium leguminosarum bv. trifolii WSM2304
Rhodococcus opacus B4
Rickettsia peacockii str. Rustic
Ralstonia pickettii 12D
Ralstonia pickettii 12J
Rhodobacter sphaeroides KD131
Sulfurihydrogenibium azorense Az-Fu1
Shewanella baltica OS223
Shigella boydii CDC 3083-94
Staphylococcus carnosus subsp. carnosus TM300
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Salmonella enterica subsp. enterica serovar Newport str. SL254
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
Salmonella enterica subsp. enterica serovar Agona str. SL483
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Streptococcus equi subsp. zooepidemicus MGCS10565
Streptococcus equi subsp. equi 4047
Streptococcus equi subsp. zooepidemicus
Streptomyces griseus subsp. griseus NBRC 13350
Slackia heliotrinireducens DSM 20476
Stenotrophomonas maltophilia K279a
Stenotrophomonas maltophilia R551-3
Candidatus Sulcia muelleri SMDSEM
Streptococcus mutans NN2025
Shewanella piezotolerans WP3
Streptococcus pneumoniae CGSP14
Streptococcus pneumoniae G54
Streptococcus pneumoniae Hungary19A-6
Streptococcus pneumoniae 70585
Streptococcus pneumoniae ATCC 700669
Streptococcus pneumoniae Taiwan19F-14
Streptococcus pneumoniae JJA
Streptococcus pneumoniae P1031
Streptococcus pyogenes NZ131
Streptococcus suis BM407
Streptococcus suis P1/7
Streptococcus suis SC84
Streptococcus uberis 0140J
Sulfurihydrogenibium sp. YO3AOP1
Saccharomonospora viridis DSM 43017
Shewanella woodyi ATCC 51908
Synechococcus sp. PCC 7002
Thermosipho africanus TCF52B
Tolumonas auensis DSM 9187
Thermotoga sp. RQ2
Thioalkalivibrio sp. HL-EbGR7
Thermotoga neapolitana DSM 4359
Thermomicrobium roseum DSM 5159
Thermodesulfovibrio yellowstonii DSM 11347
Ureaplasma parvum serovar 3 str. ATCC 27815
Ureaplasma urealyticum serovar 10 str. ATCC 33699
Vibrio cholerae M66-2
Vibrio cholerae MJ-1236
Vibrio cholerae O395
Vibrio fischeri MJ11
Variovorax paradoxus S110
Vibrio splendidus LGP32
Wolbachia sp. wRi
Wolbachia endosymbiont of Culex quinquefasciatus Pel
Xylella fastidiosa M23
Xanthomonas oryzae pv. oryzae PXO99A
Yersinia pseudotuberculosis PB1/+
Yersinia pseudotuberculosis YPIII
Flavobacteriaceae bacterium 3519-10
[EUKARYOTA] Alternaria brassicicola
Anolis carolinensis
Batrachochytrium dendrobatidis JAM81
Blastomyces dermatitidis slh14081
Blastomyces dermatitidis ER-3
Candida dubliniensis CD36
Chlorella sp. NC64A
Choloepus hoffmanni
Coccidioides immitis H538.4
Coccidioides immitis RMSCC 2394
Coccidioides immitis RMSCC 3703
Ciona intestinalis
Callithrix jacchus
Cryptococcus neoformans serotype b
Cryptococcus neoformans H99
Capsaspora owczarzaki atcc 30864
Coccidioides posadasii str. silveira
Coccidioides posadasii RMSCC 3488
Chlorella vulgaris C-169
Dipodomys ordii
Dictyostelium purpureum QSDP1
Equus caballus
Emiliania huxleyi CCMP1516
Gorilla gorilla
Heterobasidion annosum
Histoplasma capsulatum G186AR
Histoplasma capsulatum H143
Histoplasma capsulatum H88
Leishmania braziliensis
Lachancea thermotolerans
Microsporum canis CBS 113480
Mucor circinelloides CBS277.49
Macropus eugenii
Microsporum gypseum CBS 118893
Neurospora discreta
Neosartorya fischeri
Neurospora tetrasperma
Ostreococcus sp. RCC809
Paracoccidioides brasiliensis Pb01
Paracoccidioides brasiliensis Pb03
Paracoccidioides brasiliensis Pb18
Procavia capensis
Phytophthora capsici
Puccinia graminis f. sp. tritici
Pleurotus ostreatus PC15
Pichia pastoris GS115
Pongo pygmaeus
Populus trichocarpa
Pteropus vampyrus
Schizophyllum commune
Schizosaccharomyces octosporus yFS286
Spizellomyces punctatus DAOM BR117
Sus scrofa
Sporotrichum thermophile
Trichophyton equinum CBS127.97
Taeniopygia guttata
Tremella mesenterica Fries
Tarsius syrichta
Tursiops truncatus
Verticillium albo-atrum VaMs.102
Verticillium dahliae VdLs.17
Vicugna pacos
Zygosaccharomyces rouxii

[ARCHAEA]
Methanococcoides burtonii DSM 6242
Methanococcus maripaludis C7
Methanoculleus marisnigri JR1
[BACTERIA] Acinetobacter baumannii AB0057
Anaeromyxobacter dehalogenans 2CP-1
Actinobacillus pleuropneumoniae serovar 7 str. AP76
Aeromonas salmonicida subsp. salmonicida A449
Borrelia afzelii PKo
Bacillus anthracis str. 'Ames Ancestor'
Buchnera aphidicola str. Cc (Cinara cedri)
Burkholderia ambifaria AMMD
Bifidobacterium longum DJO10A
Burkholderia pseudomallei 1106a
Bacillus subtilis subsp. subtilis str. 168
Corynebacterium aurimucosum ATCC 700975
Clostridium botulinum A str. ATCC 19397
Clostridium botulinum A str. Hall
Clostridium botulinum F str. Langeland
Coxiella burnetii RSA 493
Coxiella burnetii Dugway 5J108-111
Campylobacter jejuni subsp. jejuni 81-176
Clostridium perfringens SM101
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis B/TZ1A828/OT
Chlamydia trachomatis D/UW-3/CX
Dinoroseobacter shibae DFL 12
Desulfovibrio vulgaris subsp. vulgaris DP4
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Escherichia coli str. K-12 substr. MG1655
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. mediasiatica FSC147
Herminiimonas arsenicoxydans
Haemophilus influenzae 86-028NP
Haemophilus influenzae Rd KW20
Helicobacter pylori G27
Listeria monocytogenes str. 4b F2365
Listeria monocytogenes Clip81459
Lactobacillus plantarum JDM1
Legionella pneumophila str. Corby
Microcystis aeruginosa NIES-843
Maricaulis maris MCS10
Nitrosomonas eutropha C91
Nocardia farcinica IFM 10152
Onion yellows phytoplasma OY-M
Pseudomonas aeruginosa PAO1
Pseudomonas fluorescens Pf0-1
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus str. MIT 9313
Pelobacter propionicus DSM 2379
Photobacterium profundum
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas syringae pv. phaseolicola 1448A
Chlorobium phaeovibrioides DSM 265
Rickettsia bellii OSU 85-389
Rickettsia bellii RML369-C
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides ATCC 17029
Streptococcus agalactiae A909
Streptococcus agalactiae NEM316
Staphylococcus aureus subsp. aureus str. Newman
Staphylococcus aureus subsp. aureus USA300_TCH1516
Sinorhizobium meliloti 1021
Vibrio fischeri ES114
[EUKARYOTA] Ashbya gossypii ATCC 10895
Aspergillus nidulans FGSC A4
Aspergillus niger ATCC 1015
Arabidopsis thaliana
Botryotinia fuckeliana B05.10
Bos taurus
Candida albicans
Candida albicans SC5314
Coprinus cinereus
Caenorhabditis elegans (nematode)
Canis familiaris
Candida glabrata
Coccidioides immitis RS
Cyanidioschyzon merolae (red algae)
Cryptococcus neoformans var. neoformans JEC21
Cavia porcellus
Chlamydomonas reinhardtii
Dictyostelium discoideum AX4
Debaryomyces hansenii
Drosophila melanogaster
Dasypus novemcinctus
Daphnia pulex
Danio rerio
Felis catus
Fusarium graminearum
Gasterosteus aculeatus
Gallus gallus
Giardia lamblia ATCC 50803
Guillardia theta
Histoplasma capsulatum
Homo sapiens
Homo sapiens (human)
Homo sapiens (human)
Kluyveromyces lactis
Loxodonta africana
Leishmania major strain Friedlin
Monodelphis domestica
Mycosphaerella graminicola
Magnaporthe grisea 70-15
Mus musculus
Micromonas pusilla CCMP1545
Micromonas pusilla RCC299
Ostreococcus lucimarinus CCE9901
Ochotona princeps
Oryza sativa Japonica Group
Plasmodium falciparum 3D7
Pichia stipitis CBS 6054
Pan troglodytes
Rattus norvegicus
Rhizopus oryzae RA 99-880
Saccharomyces cerevisiae
Schizosaccharomyces japonicus
Schizosaccharomyces pombe
Sclerotinia sclerotiorum 1980
Trypanosoma brucei
Tetraodon nigroviridis
Volvox carteri f. nagariensis
Yarrowia lipolytica

[ARCHAEA]
Ignicoccus hospitalis KIN4/I
Caldivirga maquilingensis IC-167
Nitrosopumilus maritimus SCM1
Halobacterium salinarum R1
Methanobrevibacter smithii ATCC 35061
Methanococcus aeolicus Nankai-3
Methanococcus maripaludis C6
Methanococcus maripaludis C7
Methanococcus vannielii SB
Candidatus Methanoregula boonei 6A8
[BACTERIA]
Corynebacterium glutamicum R
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis H37Ra
Frankia sp. EAN1pec
Kineococcus radiotolerans SRS30216
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Clavibacter michiganensis subsp. sepedonicus
Renibacterium salmoninarum ATCC 33209
Salinispora arenicola CNS-205
Bacteroides vulgatus ATCC 8482
Parabacteroides distasonis ATCC 8503
Candidatus Sulcia muelleri GWSS
Flavobacterium psychrophilum JIP02/86
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis L2b/UCH-1/proctitis
Prosthecochloris vibrioformis DSM 265
Chloroflexus aurantiacus J-10-fl
Roseiflexus castenholzii DSM 13941
Roseiflexus sp. RS-1
Herpetosiphon aurantiacus ATCC 23779
Acaryochloris marina MBIC11017
Microcystis aeruginosa NIES-843
Synechococcus sp. RCC307
Prochlorococcus marinus str. MIT 9211
Prochlorococcus marinus str. MIT 9215
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus cereus subsp. cytotoxis NVH 391-98
Bacillus weihenstephanensis KBAB4
Geobacillus thermodenitrificans NG80-2
Staphylococcus aureus subsp. aureus JH1
Staphylococcus aureus subsp. aureus Mu3
Staphylococcus aureus subsp. aureus str. Newman
Staphylococcus aureus subsp. aureus USA300_TCH1516
Alkaliphilus metalliredigens QYMF
Alkaliphilus oremlandii OhILAs
Clostridium beijerinckii NCIMB 8052
Clostridium botulinum A str. ATCC 19397
Clostridium botulinum A str. ATCC 3502
Clostridium botulinum A str. Hall
Clostridium botulinum F str. Langeland
Clostridium kluyveri DSM 555
Clostridium phytofermentans ISDg
Heliobacterium modesticaldum Ice1
Finegoldia magna ATCC 29328
Thermoanaerobacter sp. X514
Thermoanaerobacter pseudethanolicus ATCC 33223
Lactobacillus helveticus DPC 4571
Lactobacillus reuteri F275
Streptococcus gordonii str. Challis substr. CH1
Acholeplasma laidlawii PG-8A
Mycoplasma agalactiae
Caulobacter sp. K31
Bartonella tribocorum CIP 105476
Bradyrhizobium sp. BTAi1
Brucella canis ATCC 23365
Brucella ovis ATCC 25840
Brucella suis ATCC 23445
Ochrobactrum anthropi ATCC 49188
Methylobacterium sp. 4-46
Methylobacterium extorquens PA1
Parvibaculum lavamentivorans DS-1
Sinorhizobium medicae WSM419
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2
Dinoroseobacter shibae DFL 12
Gluconacetobacter diazotrophicus PAl 5
Rickettsia bellii OSU 85-389
Rickettsia akari str. Hartford
Rickettsia massiliae MTU5
Rickettsia rickettsii str. Iowa
Rickettsia rickettsii str. 'Sheila Smith'
Rickettsia canadensis str. McKiel
Sphingomonas wittichii RW1
Bordetella petrii
Burkholderia multivorans ATCC 17616
Delftia acidovorans SPH-1
Herminiimonas arsenicoxydans
Janthinobacterium sp. Marseille
Neisseria meningitidis 053442
Desulfococcus oleovorans Hxd3
Anaeromyxobacter sp. Fw109-5
Sorangium cellulosum 'So ce 56'
Arcobacter butzleri RM4018
Campylobacter concisus 13826
Campylobacter curvus 525.92
Campylobacter hominis ATCC BAA-381
Campylobacter jejuni subsp. jejuni 81-176
Campylobacter jejuni subsp. jejuni 81116
Campylobacter jejuni subsp. doylei 269.97
Nitratiruptor sp. SB155-2
Sulfurovum sp. NBC37-1
Aeromonas salmonicida subsp. salmonicida A449
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella halifaxensis HAW-EB4
Shewanella pealeana ATCC 700345
Shewanella sediminis HAW-EB3
Citrobacter koseri ATCC BAA-895
Enterobacter sakazakii ATCC BAA-894
Escherichia coli E24377A
Escherichia coli HS
Escherichia coli RS218
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--
Serratia proteamaculans 568
Yersinia pestis Angola
Yersinia pestis Pestoides F
Yersinia pseudotuberculosis IP 31758
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii RSA 331
Legionella pneumophila str. Corby
Marinomonas sp. MWYL1
Actinobacillus pleuropneumoniae serovar 3 str. JL03
Actinobacillus succinogenes 130Z
Haemophilus influenzae PittEE
Haemophilus influenzae PittGG
Psychrobacter sp. PRwf-1
Pseudomonas aeruginosa PA7
Pseudomonas putida GB-1
Pseudomonas putida F1
Francisella philomiragia subsp. philomiragia ATCC 25017
Francisella tularensis subsp. holarctica FTA
Vibrio harveyi ATCC BAA-1116
Xanthomonas campestris pv. campestris
Xylella fastidiosa M12
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95
Thermosipho melanesiensis BI429
Thermotoga lettingae TMO
[EUKARYOTA]
Aspergillus terreus
Botryotinia fuckeliana B05.10
Debaryomyces hansenii CBS767
Candida albicans
Cryptococcus neoformans var. neoformans JEC21
Mycosphaerella fijiensis
Aspergillus clavatus
Aspergillus flavus
Aspergillus oryzae
Trichoderma virens Gv29-8
Candida albicans SC5314
Candida parapsilosis
Postia placenta MAD-698
Helobdella robusta
Capitella sp. 1
Daphnia pulex
Anopheles gambiae (mosquito)
Microcebus murinus
Ochotona princeps
Erinaceus europaeus
Sorex araneus
Lottia gigantea
Trichoplax adhaerens Grell-BS-1999
Volvox carteri f. nagariensis
Micromonas pusilla CCMP1545
Micromonas pusilla RCC299
Physcomitrella patens subsp. patens
Selaginella moellendorffii
Aureococcus anophagefferens

[ARCHAEA]
Sulfolobus solfataricus P2
[BACTERIA]
Streptomyces avermitilis MA-4680
Synechocystis sp. PCC 6803
Thermosynechococcus elongatus BP-1
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus str. NATL2A
Prochlorococcus marinus str. MIT 9312
Deinococcus geothermalis DSM 11300
Bacillus licheniformis ATCC 14580
Bacillus anthracis str. 'Ames Ancestor'
Staphylococcus aureus subsp. aureus JH9
Moorella thermoacetica ATCC 39073
Lactobacillus salivarius subsp. salivarius UCC118
Onion yellows phytoplasma OY-M
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae J
Mycoplasma synoviae 53
Caulobacter crescentus CB15
Agrobacterium tumefaciens str. C58
Acidiphilium cryptum JF-5
Novosphingobium aromaticivorans DSM 12444
Nitrosomonas eutropha C91
Thiomicrospira denitrificans ATCC 33889
Saccharophagus degradans 2-40
Escherichia coli K12 MG1655
Escherichia coli APEC O1
Shigella boydii Sb227
Shigella dysenteriae Sd197
Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 2457T
Shigella sonnei Ss046
Haemophilus influenzae 86-028NP
Acinetobacter baumannii ATCC 17978
Acinetobacter sp. ADP1
Pseudomonas fluorescens Pf-5
Pseudomonas syringae pv. tomato str. DC3000
Xanthomonas campestris pv. vesicatoria
[EUKARYOTA]
Mycosphaerella graminicola
Trichoderma reesei QM9414
Nectria haematococca
Saccharomyces cerevisiae
Laccaria bicolor
Phanerochaete chrysosporium RP-78
Sporobolomyces roseus
Naegleria gruberi
Drosophila melanogaster (fruit fly)
Branchiostoma floridae (lancelet)
Fugu rubripes (Japanese puffer fish)
Danio rerio (zebrafish)
Xenopus tropicalis (western clawed frog)
Cavia porcellus (guinea pig)
Mus musculus (mouse)
Homo sapiens (human)
Homo sapiens (human)
Homo sapiens (human)
Pan troglodytes (chimpanzee)
Otolemur garnettii (galago)
Felis catus (cat)
Ornithorhynchus anatinus (platypus)
Ciona intestinalisis (sea squirt)
Nematostella vectensi (sea anemone)
Caenorhabditis elegans (nematode)
Chlamydomonas reinhardtii
Ostreococcus lucimarinus (green algae)
Ostreococcus tauri (green algae)
Populus trichocarpa (black cottonwood)
Phaeodactylum tricornutum
Thalassiosira pseudonana CCMP1335
Phytophthora sojae

[ARCHAEA]
Cenarchaeum symbiosum
Staphylothermus marinus F1
Hyperthermus butylicus DSM 5456
Metallosphaera sedula DSM 5348
Thermofilum pendens Hrk 5
Pyrobaculum arsenaticum DSM 13514
Pyrobaculum calidifontis JCM 11548
Pyrobaculum islandicum DSM 4184
Methanococcus maripaludis C5
Methanocorpusculum labreanum Z
Methanoculleus marisnigri JR1
Methanosaeta thermophila PT
[BACTERIA]
Solibacter usitatus Ellin6076
Mycobacterium gilvum PYR-GCK
Mycobacterium smegmatis str. MC2 155
Mycobacterium ulcerans Agy99
Mycobacterium vanbaalenii PYR-1
Mycobacterium sp. JLS
Mycobacterium sp. KMS
Mycobacterium avium 104
Mycobacterium bovis BCG str. Pasteur 1173P2
Acidothermus cellulolyticus 11B
Arthrobacter aurescens TC1
Arthrobacter sp. FB24
Salinispora tropica CNB-440
Nocardioides sp. JS614
Saccharopolyspora erythraea NRRL 2338
Bifidobacterium adolescentis ATCC 15703
Flavobacterium johnsoniae UW101
Gramella forsetii KT0803
Chlorobium phaeobacteroides DSM 266
Dehalococcoides sp. BAV1
Synechococcus sp. CC9311
Synechococcus sp. WH 7803
Prochlorococcus marinus str. AS9601
Prochlorococcus marinus str. MIT 9301
Prochlorococcus marinus str. MIT 9303
Prochlorococcus marinus str. MIT 9515
Prochlorococcus marinus str. NATL1A
Bacillus thuringiensis str. Al Hakam
Listeria welshimeri serovar 6b str. SLCC5334
Staphylococcus aureus subsp. aureus JH9
Clostridium novyi NT
Clostridium thermocellum ATCC 27405
Desulfotomaculum reducens MI-1
Pelotomaculum thermopropionicum SI
Caldicellulosiruptor saccharolyticus DSM 8903
Syntrophomonas wolfei subsp. wolfei str. Goettingen
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus gasseri ATCC 33323
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. cremoris MG1363
Streptococcus pneumoniae D39
Streptococcus pyogenes str. Manfredo
Streptococcus sanguinis SK36
Streptococcus suis 05ZYH33
Streptococcus suis 98HAH33
Streptococcus thermophilus LMD-9
Bartonella bacilliformis KC583
Bradyrhizobium sp. ORS278
Rhodopseudomonas palustris BisA53
Hyphomonas neptunium ATCC 15444
Maricaulis maris MCS10
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Acidiphilium cryptum JF-5
Granulibacter bethesdensis CGDNIH1
Orientia tsutsugamushi Boryong
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia mallei SAVP1
Burkholderia cenocepacia HI2424
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Ralstonia eutropha H16
Polynucleobacter sp. QLW-P1DMWA-1
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Polaromonas naphthalenivorans CJ2
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Neisseria meningitidis FAM18
Nitrosomonas eutropha C91
Azoarcus sp. BH72
Desulfovibrio vulgaris subsp. vulgaris DP4
Geobacter uraniumreducens Rf4
Pelobacter propionicus DSM 2379
Syntrophobacter fumaroxidans MPOB
Campylobacter fetus subsp. fetus 82-40
Campylobacter jejuni subsp. jejuni 81-176
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Marinobacter aquaeolei VT8
Psychromonas ingrahamii 37
Shewanella amazonensis SB2B
Shewanella baltica OS155
Shewanella frigidimarina NCIMB 400
Shewanella sp. ANA-3
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. W3-18-1
Shewanella loihica PV-4
Shewanella putrefaciens CN-32
Candidatus Carsonella ruddii PV
Dichelobacter nodosus VCS1703A
Alkalilimnicola ehrlichei MLHE-1
Halorhodospira halophila SL1
Enterobacter sp. 638
Escherichia coli APEC O1
Yersinia enterocolitica subsp. enterocolitica 8081
Actinobacillus pleuropneumoniae L20
Acinetobacter baumannii ATCC 17978
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas mendocina ymp
Pseudomonas stutzeri A1501
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. novicida U112
Francisella tularensis subsp. tularensis WY96-3418
Vibrio cholerae O395
Candidatus Vesicomyosocius okutanii HA
Magnetococcus sp. MC-1
Leptospira borgpetersenii serovar Hardjo-bovis JB197
Leptospira borgpetersenii serovar Hardjo-bovis L550
Borrelia turicatae 91E135
Thermotoga petrophila RKU-1
Buchnera aphidicola str. Cc (Cinara cedri)
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
[EUKARYOTA]
Monosiga brevicollis
Mycosphaerella graminicola
Aspergillus niger ATCC 1015
Aspergillus terreus
Histoplasma capsulatum
Uncinocarpus reesii
Coccidioides immitis RS
Fusarium verticillioides
Fusarium verticillioides
Nectria haematococca
Fusarium oxysporum
Candida lusitaniae
Lodderomyces elongisporus
Candida guilliermondii
Pichia stipitis CBS 6054
Candida tropicalis
Candida albicans
Schizosaccharomyces japonicus
Coprinus cinereus
Laccaria bicolor
Sporobolomyces roseus
Batrachochytrium dendrobatidis
Phycomyces blakesleeanus
Naegleria gruberi
Aedes aegypti
Branchiostoma floridae
Oryzias latipes
Gasterosteus aculeatus
Loxodonta africana
Echinops telfairi
Oryctolagus cuniculus
Cavia porcellus
Spermophilus tridecemlineatus
Macaca mulatta
Otolemur garnettii
Tupaia belangeri
Felis catus
Bos taurus
Myotis lucifugus
Dasypus novemcinctus
Ornithorhynchus anatinus
Ciona savignyi
Nematostella vectensis
Ostreococcus lucimarinus
Ostreococcus tauri
Populus trichocarpa
Phaeodactylum tricornutum
Phytophthora infestans
[VIRUSES]
Acanthamoeba polyphaga mimivirus
Paramecium bursaria Chlorella virus 1
Emiliania huxleyi virus 86
Ectocarpus siliculosus virus 1

[ARCHAEA]
Aeropyrum pernix K1
Sulfolobus solfataricus P2
Methanosarcina barkeri str. fusaro
[BACTERIA]
Thermus thermophilus HB8
Lactobacillus acidophilus NCFM
Mycoplasma mycoides subsp. mycoides SC
Rhizobium etli CFN 42
Rhodobacter sphaeroides 2.4.1
Roseobacter denitrificans OCh 114
Neisseria meningitidis Z2491
Nitrosomonas europaea ATCC 19718
Pelobacter carbinolicus DSM 2380
Campylobacter jejuni subsp. jejuni NCTC 11168
Shewanella oneidensis MR-1
Baumannia cicadellinicola Hc (Homalodisca coagulata)
Yersinia pestis CO92
Pseudomonas fluorescens Pf-5
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas syringae pv. phaseolicola 1448A
Xanthomonas oryzae pv. oryzae KACC10331
Borrelia afzelii PKo
[EYKARYOTA]
Cryptosporidium parvum
Plasmodium falciparum 3D7
Giardia lamblia ATCC 50803
Trypanosoma brucei TREU927
Aspergillus nidulans FGSC A4
Aspergillus fumigatus Af293
Sclerotinia sclerotiorum 1980
Trichoderma reesei QM9414
Magnaporthe grisea 70-15
Neurospora crassa OR74A
Yarrowia lipolytica CLIB122
Debaryomyces hansenii CBS767
Ashbya gossypii ATCC 10895
Saccharomyces cerevisiae
Schizosaccharomyces pombe 972h-
Phanerochaete chrysosporium RP-78
Rhizopus oryzae RA 99-880
Drosophila melanogaster
Anopheles gambiae
Fugu rubripes
Danio rerio
Xenopus tropicalis
Gallus gallus
Mus musculus
Rattus norvegicus
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens cDNA
Pan troglodytes
Canis familiaris
Monodelphis domestica
Ciona intestinalis
Caenorhabditis elegans
Chlamydomonas reinhardtii
Oryza sativa (japonica cultivar-group)
Thalassiosira pseudonana CCMP1335
Phytophthora ramorum
Phytophthora sojae

[ARCHAEA]
Haloquadratum walsbyi DSM 16790
Methanospirillum hungatei JF-1
Methanococcoides burtonii DSM 6242
[BACTERIA]
Acidobacteria bacterium Ellin345
Mycobacterium sp. MCS
Rhodococcus sp. RHA1
Frankia alni ACN14a
Frankia sp. CcI3
Rubrobacter xylanophilus DSM 9941
Cytophaga hutchinsonii ATCC 33406
Chlamydophila felis Fe/C-56
Synechococcus sp. JA-3-3Ab
Synechococcus sp. JA-2-3B'a(2-13)
Trichodesmium erythraeum IMS101
Deinococcus geothermalis DSM 11300
Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus aureus subsp. aureus USA300
Clostridium difficile 630
Clostridium perfringens ATCC 13124
Clostridium perfringens SM101
Desulfitobacterium hafniense Y51
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Lactobacillus salivarius subsp. salivarius UCC118
Streptococcus pyogenes MGAS10270
Streptococcus pyogenes MGAS10750
Streptococcus pyogenes MGAS2096
Streptococcus pyogenes MGAS9429
Nitrobacter hamburgensis X14
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris HaA2
Mesorhizobium sp. BNC1
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Jannaschia sp. CCS1
Roseobacter denitrificans OCh 114
Silicibacter sp. TM1040
Anaplasma phagocytophilum HZ
Ehrlichia chaffeensis Arkansas
Neorickettsia sennetsu str. Miyayama
Rickettsia bellii RML369-C
Erythrobacter litoralis HTCC2594
Novosphingobium aromaticivorans DSM 12444
Sphingopyxis alaskensis RB2256
Bordetella avium 197N
Burkholderia xenovorans LB400
Burkholderia cenocepacia AU 1054
Ralstonia metallidurans CH34
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Methylobacillus flagellatus KT
Lawsonia intracellularis PHE/MN1-00
Anaeromyxobacter dehalogenans 2CP-C
Myxococcus xanthus DK 1622
Syntrophus aciditrophicus SB
Helicobacter acinonychis Sheeba
Helicobacter pylori HPAG1
Saccharophagus degradans 2-40
Pseudoalteromonas atlantica T6c
Shewanella denitrificans OS217
Baumannia cicadellinicola Hc (Homalodisca coagulata)
Escherichia coli UTI89
Escherichia coli 536
Shigella flexneri 5 8401
Yersinia pestis Antiqua
Yersinia pestis Nepal516
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043
Haemophilus somnus 129PT
Psychrobacter cryohalolentis K5
Pseudomonas entomophila L48
Francisella tularensis subsp. holarctica LVS
Borrelia afzelii PKo
[EYKARYOTA]
Cryptosporidium parvum
Trypanosoma brucei TREU927
Aspergillus fumigatus Af293
Cryptococcus neoformans var. neoformans JEC21
Dictyostelium discoideum AX4

[BACTERIA]
Mycobacterium tuberculosis CDC1551
Bifidobacterium longum NCC2705
Chlorobium tepidum TLS
Bacillus cereus E33L
Staphylococcus aureus subsp. aureus Mu50
Staphylococcus aureus subsp. aureus COL
Mycoplasma mobile 163K
Brucella suis 1330
Burkholderia mallei ATCC 23344
Neisseria meningitidis MC58
Azoarcus sp. EbN1
Geobacter sulfurreducens PCA
Escherichia coli K12 MG1655
Shigella flexneri 2a str. 301
Coxiella burnetii RSA 493
Methylococcus capsulatus str. Bath
Xanthomonas axonopodis pv. citri str. 306
Leishmania major strain Friedlin
[EYKARYOTA]
Neurospora crassa OR74A
Ashbya gossypii ATCC 10895
Saccharomyces cerevisiae
Schizosaccharomyces pombe 972h-
Drosophila melanogaster
Anopheles gambiae
Fugu rubripes
Tetraodon nigroviridis
Danio rerio
Xenopus tropicalis
Gallus gallus
Mus musculus
Rattus norvegicus
Homo sapiens
Homo sapiens cDNA
Pan troglodytes
Canis familiaris
Ciona intestinalis
Caenorhabditis elegans
Oryza sativa (japonica cultivar-group)
Arabidopsis thaliana

[ARCHAEA]
Aeropyrum pernix K1(RefSeq Sequence)
Sulfolobus acidocaldarius DSM 639
Natronomonas pharaonis DSM 2160
Methanosphaera stadtmanae DSM 3091
Methanosarcina barkeri str. fusaro
[BACTERIA]
Corynebacterium jeikeium K411
Thermobifida fusca YX
Salinibacter ruber DSM 13855
Chlamydia trachomatis A/HAR-13
Chlamydophila abortus S26/3
Chlorobium chlorochromatii CaD3
Pelodictyon luteolum DSM 273
Dehalococcoides sp. CBDB1
Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942
Synechococcus sp. CC9902
Synechococcus sp. CC9605
Anabaena variabilis ATCC 29413
Prochlorococcus marinus str. NATL2A
Prochlorococcus marinus str. MIT 9312
Staphylococcus aureus RF122
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Carboxydothermus hydrogenoformans Z-2901
Moorella thermoacetica ATCC 39073
Lactobacillus sakei subsp. sakei 23K
Streptococcus agalactiae A909
Streptococcus pyogenes MGAS5005
Streptococcus pyogenes MGAS6180
Aster yellows witches'-broom phytoplasma AYWB
Mycoplasma capricolum subsp. capricolum ATCC 27343
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae J
Mycoplasma synoviae 53
Nitrobacter winogradskyi Nb-255
Brucella abortus biovar 1 str. 9-941
Brucella melitensis biovar Abortus
Rhodobacter sphaeroides 2.4.1
Magnetospirillum magneticum AMB-1
Rhodospirillum rubrum ATCC 11170
Ehrlichia canis str. Jake
Rickettsia felis URRWXCal2
Candidatus Pelagibacter ubique HTCC1062
Burkholderia sp. 383
Burkholderia pseudomallei 1710b
Burkholderia thailandensis E264
Ralstonia eutropha JMP134
Thiobacillus denitrificans ATCC 25259
Nitrosospira multiformis ATCC 25196
Dechloromonas aromatica RCB
Desulfovibrio desulfuricans G20
Geobacter metallireducens GS-15
Pelobacter carbinolicus DSM 2380
Thiomicrospira denitrificans ATCC 33889
Colwellia psychrerythraea 34H
Pseudoalteromonas haloplanktis TAC125
Nitrosococcus oceani ATCC 19707
Escherichia coli K12 W3110
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Shigella boydii Sb227
Shigella dysenteriae Sd197
Shigella sonnei Ss046
Sodalis glossinidius str. 'morsitans'
Candidatus Blochmannia pennsylvanicus str. BPEN
Hahella chejuensis KCTC 2396
Haemophilus influenzae 86-028NP
Psychrobacter arcticus 273-4
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens PfO-1
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas syringae pv. syringae B728a
Thiomicrospira crunogena XCL-2
Xanthomonas campestris pv. vesicatoria
Xanthomonas campestris pv. campestris str. 8004
Xanthomonas oryzae pv. oryzae MAFF 311018
[EUKARYOTA]
Phaeosphaeria nodorum SN15
Botryotinia fuckeliana B05.10
Sclerotinia sclerotiorum 1980
Trichoderma reesei QM9414
Chaetomium globosum CBS 148.51
Phanerochaete chrysosporium RP-78
Rhizopus oryzae RA 99-880
Apis mellifera
Monodelphis domestica
Phytophthora ramorum
Phytophthora sojae

[ARCHAEA]
Pyrococcus horikoshii OT3

[BACTERIA]
Streptomyces avermitilis
Bifidobacterium longum NCC2705
Bacillus anthracis str. Ames 0581
Bacillus anthracis str. Sterne
Bacillus thuringiensis serovar konkukian str. 97-27
Staphylococcus aureus Mu50
Lactobacillus plantarum WCFS1
Rhodopseudomonas palustris
Brucella suis 1330
Ralstonia solanacearum GMI1000
Chromobacterium violaceum ATCC 12472
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Geobacter sulfurreducens PCA
Salmonella Typhi CT18
Shigella flexneri 2a 301
Wigglesworthia brevipalpis
Coxiella burnetii RSA 493
Photobacterium profundum ss9
Vibrio cholerae N16961
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Borrelia burgdorferi
Treponema pallidum subsp. pallidum str. Nichols

[EUKARYOTA]
Ashbya gossypii
Saccharomyces cerevisiae
Schizosaccharomyces pombe 972h-
Drosophila melanogaster
nopheles gambiae
anio rerio
Gallus gallus
Homo sapiens
Homo sapiens
Pan troglodytes
Mus musculus
Rattus norvegicus
Ciona intestinalis
Caenorhabditis elegans
Cyanidioschyzon merolae
Oryza sativa (japonica cultivar-group)

[ARCHAEA]
Haloarcula marismortui ATCC 43049
Thermococcus kodakaraensis KOD1

[BACTERIA]
Nocardia farcinica IFM 10152
Leifsonia xyli subsp. xyli str. CTCB07
Propionibacterium acnes KPA171202
Symbiobacterium thermophilum IAM 14863
Bacteroides fragilis NCTC 9343
Bacteroides fragilis YCH46
Dehalococcoides ethenogenes 195
Thermus thermophilus HB8
Bacillus licheniformis DSM 13
Bacillus licheniformis ATCC 14580
Bacillus cereus ZK
Bacillus clausii KSM-K16
Geobacillus kaustophilus HTA426
Staphylococcus aureus subsp. aureus COL
Staphylococcus epidermidis RP62A
Staphylococcus aureus subsp. aureus MSSA476
Lactobacillus acidophilus NCFM
Streptococcus pyogenes MGAS10394
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMG 18311
Mesoplasma florum L1
Mycoplasma hyopneumoniae 232
Bartonella henselae Houston-1
Bartonella quintana Toulouse
Silicibacter pomeroyi DSS-3
Gluconobacter oxydans 621H
Anaplasma marginale str. St. Maries
Ehrlichia ruminantium Welgevonden(ARC-OVI)
Ehrlichia ruminantium str. Welgevonden(CIRAD)
Ehrlichia ruminantium str. Gardel
Rickettsia typhi str. Wilmington
Wolbachia endosymbiont strain TRS of Brugia malayi
Zymomonas mobilis subsp. mobilis ZM4
Burkholderia mallei ATCC 23344
Burkholderia pseudomallei K96243
Neisseria gonorrhoeae FA 1090
Azoarcus sp. EbN1
Desulfotalea psychrophila LSv54
Campylobacter jejuni RM1221
Idiomarina loihiensis L2TR
Erwinia carotovora subsp. atroseptica SCRI1043
Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
Yersinia pseudotuberculosis IP 32953
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Legionella pneumophila str. Lens
Legionella pneumophila str. Paris
Methylococcus capsulatus str. Bath
Mannheimia succiniciproducens MBEL55E
Acinetobacter sp. ADP1
Francisella tularensis subsp. tularensis
Vibrio fischeri ES114
Xanthomonas oryzae pv. oryzae KACC10331
Borrelia garinii PBi

[EUKARYOTA]
Cryptosporidium hominis
Plasmodium yoelii yoelii
Thalassiosira pseudonana CCMP1335
Giardia lamblia ATCC 50803
Aspergillus nidulans FGSC A4
Gibberella zeae PH-1
Magnaporthe grisea 70-15
Yarrowia lipolytica CLIB99
Debaryomyces hansenii CBS767
Kluyveromyces lactis NRRL Y-1140
Naumovia castellii
Saccharomyces bayanus
Saccharomyces kluyveri
Saccharomyces kudriavzevii
Saccharomyces mikatae
Saccharomyces paradoxus
Candida glabrata CBS138
Ustilago maydis 521
Bombyx mori
Canis familiaris
Tetraodon nigroviridis

[VIRUSES]
P-SSM2
P-SSM4
ES18
KS7
Mx8
P-SSP7
ƒÓJL001
SM1
BcepNazgul
Felix 01
MAV1
PBC5
ƒÓHSIC
ƒÓMFV1
Xp10
K

[ARCHAEA]
Methanococcus maripaludis S2

[BACTERIA]
Mycobacterium tuberculosis H37Rv
Synechocystis sp. PCC 6803
Rhodopseudomonas palustris
Buchnera aphidicola Sg
Leptospira interrogans serovar lai str. 56601

[EUKARYOTA]
Plasmodium falciparum 3D7
Neurospora crassa
Saccharomyces cerevisiae
Schizosaccharomyces pombe 972h-
Drosophila melanogaster
Danio rerio
Homo sapiens
Mus musculus
Rattus norvegicus
Caenorhabditis briggsae
Caenorhabditis elegans
Oryza sativa (japonica cultivar-group)
Arabidopsis thaliana

[VIRUSES]
186
P1
A118
Stx2

[ARCHAEA]
Picrophilus torridus DSM 9790

[BACTERIA]
Corynebacterium glutamicum ATCC 13032
Mycobacterium avium subsp. paratuberculosis str. k10
Parachlamydia sp. UWE25
Bacillus anthracis str. Ames 0581
Bacillus anthracis str. Sterne
Bacillus thuringiensis serovar konkukian str. 97-27
Listeria monocytogenes str. 4b F2365
Staphylococcus aureus subsp. aureus MRSA252
Mycoplasma mobile 163K
Mycoplasma mycoides subsp. mycoides SC
Wolbachia endosymbiont of Drosophila melanogaster
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Photobacterium profundum
Treponema denticola ATCC 35405

[EUKARYOTA]
Ashbya gossypii
Anopheles gambiae
Xenopus tropicalis
Gallus gallus
Homo sapiens Hinv1 ORF
Homo sapiens NCBI ORF
Pan troglodytes
Cyanidioschyzon merolae
Chlamydomonas reinhardtii

[VIRUSES]
AaƒÓ23
BcepMu
BcepB1A
Bxz1
P1
PSP3
BIP-1
BMP-1
C1
PaP2
VP5
VP2
ƒÓ4795
Barnyard
Bxz2
Che8
Che9c
Che9d
CJW1
Corndog
Omega
ƒÓKO2
ƒÓLC3
Rosebush
Stx1 converting bacteriophage
Stx2 converting bacteriophage II
T1
T5
BcepC6B

Onion yellows phytoplasma (oyel0) -> Phytoplasma asteris, OY strain (past0)

[ARCHAEA]
Methanococcus maripaludis

[BACTERIA]
Thermus thermophilus HB27
Bacillus cereus ATCC 10987
Lactobacillus johnsonii NCC 533
Bdellovibrio bacteriovorus
Yersinia pestis biovar Mediaevails str. 91001
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

[EUKARYOTA]
Oryza sativa cDNA(japonica cultivar-group)

[VIRUSES]
Bcep1
Bcep43
EJ-1
Bcep22
BPP-1
Sf6
77
D3112
Lj928
Lj965
PG1
ƒÓ11
ƒÓ12
ƒÓ13
VWB
026b

[ARCHAEA]
Nanoarchaeum equitans Kin4-M

[BACTERIA]
Corynebacterium diphtheriae NCTC13129
Mycobacterium bovis subsp. bovis AF2122/97
Porphyromonas gingivalis W83
Chlamydophila pneumoniae TW-183
Gloeobacter violaceus PCC 7421
Synechococcus sp. WH 8102
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT9313
Prochlorococcus marinus marinus CCMP1375
Onion yellows phytoplasma
Mycoplasma gallisepticum R
Pirellula sp. 1
Rhodopseudomonas palustris
Bordetella bronchiseptica RB50
Bordetella parapertussis
Bordetella pertussis Tohama I
Chromobacterium violaceum ATCC 12472
Geobacter sulfurreducens PCA
Helicobacter hepaticus ATCC 51449
Wolinella succinogenes DSMZ 1740
Photorhabdus luminescens laumondii TTO1
Candidatus Blochmannia floridanus
Haemophilus ducreyi 35000HP
Vibrio vulnificus YJ016

[VIRUSES]
Bacteriophage 44RR2.8t
Bacteriophage KVP40
Bacteriophage WPhi
bacteriophage phiKMV
Bacteriophage PY54
Alteromonas phage PM2

[EUKARYOTA]
Drosophila melanogaster
Plasmodium falciparum 3D7
Saccharomyces cerevisiae
Mus musculus
Arabidopsis thaliana

[EUKARYOTA]
Caenorhabditis briggsae
Danio rerio
Homo sapiens
Rattus norvegicus

[EUBACTERIA]
Streptomyces avermitilis
Tropheryma whipplei TW08/27
Tropheryma whipplei str. Twist
Bacteroides thetaiotaomicron VPI-5482
Chlamydophila caviae GPIC
Bacillus anthracis str. Ames
Bacillus cereus ATCC 14579
Clostridium tetani E88
Enterococcus faecalis V583
Lactobacillus plantarum WCFS1
Streptococcus pyogenes SSI-1
Nitrosomonas europaea ATCC 19718
Escherichia coli K-12 W3110
Salmonella enterica subsp. enterica serovar Typhi Ty2
Shigella flexneri 2a str. 2457T
Coxiella burnetii RSA 493
Pseudomonas syringae pv. tomato str. DC3000
Vibrio parahaemolyticus RIMD 2210633
Xylella fastidiosa 9a5c
Xylella fastidiosa Temecula1
[EUKARYOTA]
Neurospora crassa
[VIRUSES]
Bacteriophage Aeh1
Bacteriophage L-413C
Enterobacteria phage RB49
Bacteriophage RM 378
Staphylococcus phage 44AHJD
Enterobacteria phage epsilon15
Pseudomonas phage gh-1
Yersinia pestis phage phiA1122
Staphylococcus aureus phage phiP68
Roseophage SIO1
Mycoplasma virus P1
Cyanophage P60
Shigella flexneri bacteriophage V
Bacteriophage 933W
Pseudomonas phage D3
Enterobacteria phage HK022
Bacteriophage HK97
Mycobacterium phage L5
Bacteriophage N15
Bacteriophage P27
Bacteriophage phi-105
Bacteriophage phi-C31
Bacteriophage phiE125
Bacteriophage phi-BT1
Bacteriophage SPP1
Stx2 converting bacteriophage I
Bacteriophage bIL170
Bacteriophage bIL285
Bacteriophage bIL286
Bacteriophage bIL309
Bacteriophage bIL310
Bacteriophage bIL311
Bacteriophage bIL312
Lactococcus phage BK5-T
Mycobacteriophage Bxb1
Mycobacteriophage D29
Bacteriophage HK620
Listeria phage 2389
Lactobacillus casei bacteriophage A2
Lactococcus phage P335
Bacteriophage phi3626
Bacteriophage phi ETA
Temperate phage PhiNIH1.1
Staphylococcus aureus prophage phiPV83
Staphylococcus aureus temperate phage phiSLT
Lactobacillus bacteriophage phi adh
Methanothermobacter wolfeii prophage psiM100
Bacteriophage r1t
Staphylococcus aureus bacteriophage PVL
Bacteriophage SPBc2
Streptococcus pneumoniae bacteriophage MM1
Streptococcus thermophilus bacteriophage 7201
Streptococcus thermophilus bacteriophage DT1
Streptococcus thermophilus temperate bacteriophage O1205
Streptococcus thermophilus bacteriophage Sfi19
Streptococcus thermophilus bacteriophage Sfi21
Mycobacteriophage TM4
Lactococcus lactis bacteriophage TP901-1
Bacteriophage Tuc2009
Lactococcus lactis bacteriophage ul36
Bacteriophage VT2-Sa
Enterobacteria phage PRD1

[EUBACTERIA]
Corynebacterium efficiens YS-314
Staphylococcus epidermidis ATCC 12228
Streptococcus agalactiae NEM316
Streptococcus mutans UA159
Mycoplasma penetrans
Bradyrhizobium japonicum
Brucella suis 1330
Escherichia coli CFT073
Wigglesworthia brevipalpis
Buchnera aphidicola (Baizongia pistaciae)
Pseudomonas putida KT2440
Vibrio vulnificus CMCP6
Shewanella oneidensis MR-1
Shigella flexneri 2a 301
Leptospira interrogans serovar lai 56601
[EUKARYOTA]
Ciona intestinalis
Oryza sativa (japonica cultivar-group)
[VIRUSES]
Burkholderia cepacia phage Bcep781
Halovirus HF2
Haemophilus phage HP2
Pseudomonas phage phiKZ
Virus PhiCh1
Vibrio harveyi bacteriophage VHML
Bacteriophage K139
Enterobacteria phage RB69
Acyrthosiphon pisum bacteriophage APSE-1
Mycoplasma virus P1
Salmonella typhimurium phage ST64B
Salmonella typhimurium bacteriophage ST64T
Pseudomonas aeruginosa phage PaP3
Bacteriophage phiYeO3-12
Vibriophage VpV262
Bacillus phage GA-1

[EUKARYOTA]
Homo sapiens cDNA

[ARCHAEA]
Methanosarcina mazei Goe1
[EUBACTERIA]
Corynebacterium glutamicum ATCC 13032
Streptomyces coelicolor A3(2)
Bifidobacterium longum NCC2705
Chlorobium tepidum TLS
Thermosynechococcus elongatus BP-1
Oceanobacillus iheyensis HTE831
Thermoanaerobacter tengcongensis MB4T
Streptococcus agalactiae
Streptococcus pyogenes MGAS315
Buchnera aphidicola Sg
Yersinia pestis KIM
Xanthomonas axonopodis pv. citri 306
Xanthomonas campestris pv. campestris ATCC 33913
[EUKARYOTAE]
Plasmodium falciparum
Guillardia theta Nucleomorph
Leishmania major Friedlin
Takifugu rubripes rubripes
Mus musculus (cDNA)
[VIRUSES]
Pseudomonas aeruginosa phage PA01
Haemophilus influenzae phage Rd
Bacteriophage T3
Bacteriophage A511
Pseudomonas aeruginosa phage phi CTX
Haemophilus phage HP1
Bacteriophage P4
Bacteriophage Mu
Enterobacteria phage 186
Bacteriophage P2
Bacteriophage H-19B
Bacteriophage P22
Bacteriophage SP6
Bacteriophage T7
Bacteriophage B103
Streptococcus phage Cp-1
Bacillus phage PZA
Bacteriophage phig1e
Bacteriophage A118
Bacteriophage B1
Methanobacterium phage psiM2
Streptococcus thermophilus bacteriophage Sfi11
Bacteriophage sk1
Bacteriophage lambda
Enterobacteria phage BF23

• Analyses of the following 12 organisms were added to GTOP:

  [ARCHAEA]
  Methanopyrus kandleri
  Methanosarcina acetivorans
  Pyrobaculum aerophilum IM2
  Pyrococcus furiosus
  [EUBACTERIA]
  Agrobacterium tumefaciens C58 (U. Washington)
  Brucella melitensis 16M
  Clostridium perfringens 13
  Fusobacterium nucleatum subsp.
  Ralstonia solanacearum GMI1000
  Streptococcus pyogenes MGAS8232
  [EUKARYOTAE]
  Schizosaccharomyces pombe
  Encephalitozoon cuniculi
  

• Analyses of the following 13 organisms were renewed:

  [EUBACTERIA]
  Anabaenap sp. PCC7120
  Caulobacter crescentus
  Clostridium acetobutylicum
  Listeria innocua Clip 11262
  Mycoplasma pneumoniae
  Saccharomyces cerevisiae
  Salmonella typhi CT18
  Salmonella typhimurium LT2
  Staphylococcus aureus Mu50
  Staphylococcus aureus N315
  [EUKARYOTAE]
  Arabidopsis thaliana
  Caenorhabditis elegans
  Homo sapiens
  

• Current Version of Databases

  [DATABASE]	[VERSION]
  PDB	2002-May-7
  Swissprot	40.12
  SCOP	1.57
  Pfam	7.2
  ProSite	17.03
  HUGE	2002-Apr-10(kiaa1987)

• Analyses of the following 9 organisms were added to GTOP:

  [EUBACTERIA]
  Anabaena sp. PCC7120
  Listeria innocua Clip 11262
  Listeria monocytogenes EGD-e
  Rickettsia conorii Malish 7
  Streptcoccus pneumoniae R6
  Sulfolobus tokodaii strain7
  Salmonella typhi CT18
  Salmonella typhimurium LT2
  Yersinia pestis CO92
  

• Analyses of the following 3 organisms were renewed:

  [EUBACTERIA]
  Synechosystis PCC6803
  [EUKARYOTAE]
  Arabidopsis thaliana
  Caenorhabditis elegans
  

• Current Version of Databases

  [DATABASE]	[VERSION]
  PDB	2001-Dec-6
  Swissprot	40.4
  SCOP	1.55
  Pfam	6.6
  ProSite	17.03
  Wormpep	69
  HUGE	2001-Aug-18(kiaa1878)

• Analyses of the following 20 organisms were added to GTOP:

  [ARCHAEA]
  Sulfolobus solfataricus
  Thermoplasma volcanium
  [EUBACTERIA]
  Chlamydophila pneumoniae AR39
  Chlamydophila pneumoniae J138
  Mycobacterium leprae
  Mycobacterium tuberculosis CDC1551
  Clostridium acetobutylicum
  Mycoplasma pulmonis
  Staphylococcus aureus
  Staphylococcus aureus
  Streptococcus pneumoniae
  Streptococcus pyogenes
  Agrobacterium tumefaciens
  Caulobacter crescentus
  Mesorhizobium loti
  Sinorhizobium meliloti
  Neisseria meningitidis Z2491
  Helicobacter pylori J99
  Escherichia coli O157:H7
  [EUKARYOTAE]
  Arabidopsis thaliana
  

• Current Version of Databases

  [DATABASE]	[VERSION]
  PDB	2001-Sep-14
  Swissprot	39.24
  SCOP	1.55
  Pfam	6.6
  ProSite	16.43
  Wormpep	57
  HUGE	2001-Aug-18(kiaa1878)

• The sequences of Escherichia coli O157 were updated. The number of ORFs was changed from 5283 to 5349.
• A weekly data-updating system for Blast Search against PDB has been established.

• Analyses of the following 14 organisms were added to GTOP:

  [EUBACTERIA]
  Escherichia coli O157
  Xylella fastidiosa
  Pasteurella multocida
  Buchnera sp. APS
  Neisseria meningitidis
  Campylobacter jejuni
  Lactococcus lactis
  Ureaplasma urealyticum
  Chlamydia muridarum
  Chlamydophila pneumoniae CWL029
  Deinococcus radiodurans
  [ARCHAEA]
  Thermoplasma acidophilum
  Halobacterium sp.NRC-1
  [EUKARYOTAE]
  Drosophila melanogaster
  

• The PDB database was updated from 2000-Oct-21 to 2001-Mar-4.
• The Swissprot database was updated from release 39.0 to 39.14.
• The HUGE database was updated from KIAA1643 to KIAA1772.
• The protein sequences of C. elegans were updated from Wormpep18 to Wormpep40.
• The Summary page was redesigned.
• Family Ranking search was added to the search page.

• A summary of transmembrane helices was added to Summary page. The ORFs were classified according the number of transmembrane helices they have as predicted by the SOSUI program.
• The group "family" was added to the SCOP taxonomy page. The "family" contains more closely related proteins, than the "superfamily" does.

• The service of 3D-structure predition started, using BLAST and Reverse-PSI-BLAST. If you submit a sequence, results of homology search are returned immediately.

• Analyses of the following five organisms were added to GTOP (see the Organisms page):

  Pseudomonas aeruginosa
  Rickettsia prowazekii
  Mycobacterium tuberculosis
  Borrelia burgdorferi
  Treponema pallidum
  

• The HUGE database was updated from KIAA1543 to KIAA1643.
• The PDB database was updated from 2000-Aug-6 to 2000-Oct-21.
• The SCOP database was updated from 1.50 to 1.53.