Actinobacteria
|
ORF
num
|
TF
num
|
TF
fam
|
|
Corynebacterium
diphtheriae NCTC13129
|
cdip0
|
2272 |
68
|
24
|
|
Corynebacterium
efficiens YS-314
|
ceff0
|
2998
|
113
|
26
|
|
Corynebacterium
glutamicum ATCC 13032
|
cglu0
|
3099
|
126
|
28
|
|
Mycobacterium
leprae TN
|
mlep0
|
1605
|
40
|
18
|
|
Mycobacterium
tuberculosis H37Rv
|
mtub0
|
3918
|
148
|
28
|
|
Mycobacterium
tuberculosis CDC1551
|
mtub1
|
4187
|
145
|
28
|
|
Mycobacterium
bovis subsp. bovis AF2122/97
|
mbov0
|
3920
|
149
|
28
|
|
Streptomyces
avermitilis
|
save0
|
7671
|
523
|
35
|
|
Streptomyces
coelicolor A3(2)
|
scoe0
|
8154
|
639
|
35
|
|
Bifidobacterium
longum NCC2705
|
blon0
|
1731
|
85
|
24
|
|
Tropheryma
whipplei TW08/27
|
twhi0
|
783
|
8
|
6
|
|
Tropheryma
whipplei str. Twist
|
twhi1
|
808
|
8
|
6
|
|
|
|
|
|
|
Aquificae
|
|
Aquifex
aeolicus
VF5
|
aaeo0
|
1553
|
25
|
13
|
|
|
|
|
|
|
Bacteroidetes
|
|
Bacteroides
thetaiotaomicron VPI-5482
|
bthe0
|
4816
|
160
|
22
|
|
Porphyromonas
gingivalis W83
|
pgin0
|
1909
|
31
|
15
|
|
|
|
|
|
|
Chlamydiae
|
|
Chlamydia
muridarum Nigg
|
cmur0
|
911
|
4
|
3
|
|
Chlamydia
trachomatis D/UW-3/CX
|
ctra0
|
894
|
5
|
4
|
|
Chlamydophila
pneumoniae AR39
|
cpne0
|
1116
|
5
|
4
|
|
Chlamydophila
caviae GPIC
|
ccav0
|
1005
|
6
|
5
|
|
Chlamydophila
pneumoniae CWL029
|
cpne1
|
1052
|
5
|
4
|
|
Chlamydophila
pneumoniae J138
|
cpne2
|
1069
|
5
|
4
|
|
Chlamydophila
pneumoniae TW-183
|
cpne3
|
1113
|
5
|
4
|
|
|
|
|
|
|
Chlorobi
|
|
Chlorobium
tepidum TLS
|
ctep0
|
2252
|
21
|
14
|
|
|
|
|
|
|
Cyanobacteria
|
|
Gloeobacter
violaceus PCC 7421
|
gvio0
|
4430
|
122
|
21
|
|
Synechococcus
sp. WH 8102
|
syne1
|
2517
|
27
|
12
|
|
Synechocystis
sp. PCC 6803
|
syne0
|
3167
|
54
|
17
|
|
Thermosynechococcus
elongatus BP-1
|
telo0
|
2475
|
33
|
14
|
|
Nostoc
sp. PCC
7120
|
anab0
|
6132
|
133
|
22
|
|
Prochlorococcus
marinus MED4
|
pmar0
|
1712
|
18
|
12
|
|
Prochlorococcus
marinus MIT9313
|
pmar1
|
2265
|
26
|
12
|
|
Prochlorococcus
marinus marinus CCMP1375
|
pmar2
|
1882
|
18
|
11
|
|
|
|
|
|
|
Deinococcus-Thermus
|
|
Deinococcus
radiodurans R1
|
drad0
|
3102
|
87
|
25
|
|
Thermus
thermophilus HB27
|
tthe0
|
2210
|
45
|
21
|
|
|
|
|
|
|
Firmicutes /
Bacillales
|
|
Bacillus
halodurans C-125
|
bhal0
|
4066
|
219
|
40
|
|
Bacillus
anthracis str. Ames
|
bant0
|
5311
|
274
|
40
|
|
Bacillus
cereus
ATCC 14579
|
bcer0
|
5255
|
264
|
39
|
|
Bacillus
cereus
ATCC 10987
|
bcer1
|
5844
|
297
|
42
|
|
Bacillus
subtilis 168
|
bsub0
|
4106
|
213
|
41
|
|
Oceanobacillus
iheyensis HTE831
|
oihe0
|
3496
|
158
|
38
|
|
Listeria
innocua
Clip11262
|
linn0
|
3043
|
169
|
32
|
|
Listeria
monocytogenes EGD-e
|
lmon0
|
2846
|
176
|
35
|
|
Staphylococcus
aureus Mu50
|
saur0
|
2748
|
106
|
30
|
|
Staphylococcus
aureus N315
|
saur1
|
2624
|
105
|
30
|
|
Staphylococcus
aureus MW2
|
saur2
|
2659
|
100
|
28
|
|
Staphylococcus
epidermidis ATCC 12228
|
sepi0
|
2485
|
83
|
28
|
|
|
|
|
|
|
Firmicutes /
Clostridia
|
|
Clostridium
acetobutylicum ATCC824
|
cace0
|
3848
|
211
|
38
|
|
Clostridium
perfringens 13
|
cper0
|
2723
|
110
|
32
|
|
Clostridium
tetani E88
|
ctet0
|
2432
|
114
|
34
|
|
Thermoanaerobacter
tengcongensis MB4T
|
tten0
|
2588
|
85
|
32
|
|
|
|
|
|
|
Firmicutes /
Lactobacillales
|
|
Enterococcus
faecalis V583
|
efae0
|
3265
|
163
|
36
|
|
Lactobacillus
johnsonii NCC533
|
ljoh0
|
1821
|
79
|
22
|
|
Lactobacillus
plantarum WCFS1
|
lpla0
|
3009
|
210
|
32
|
|
Lactococcus
lactis IL1403
|
llac0
|
2266
|
111
|
27
|
|
Streptococcus
agalactiae
|
saga0
|
2124
|
102
|
29
|
|
Streptococcus
agalactiae NEM316
|
saga1
|
2094
|
96
|
29
|
|
Streptococcus
mutans UA159
|
smut0
|
1960
|
110
|
27
|
|
Streptococcus
pneumoniae R6
|
spne0
|
2094
|
83
|
27
|
|
Streptococcus
pneumoniae TIGR4
|
spne1
|
2043
|
82
|
27
|
|
Streptococcus
pyogenes SF370
|
spyo0
|
1696
|
79
|
28
|
|
Streptococcus
pyogenes MGAS8232
|
spyo1
|
1845
|
84
|
28
|
|
Streptococcus
pyogenes MGAS315
|
spyo2
|
1865
|
87
|
28
|
|
Streptococcus
pyogenes SSI-1
|
spyo3
|
1861
|
86
|
28
|
|
|
|
|
|
|
Firmicutes /
Mollicutes
|
|
Phytoplasma
asteris, OY strain
|
past0
|
754
|
2
|
2
|
|
Mycoplasma
gallisepticum R
|
mgal0
|
726
|
4
|
4
|
|
Mycoplasma
genitalium G37
|
mgen0
|
480
|
3
|
3
|
|
Mycoplasma
penetrans
|
mpen0
|
1037
|
9
|
9
|
|
Mycoplasma
pneumoniae M129
|
mpne0
|
688
|
3
|
3
|
|
Mycoplasma
pulmonis UAB CTIP
|
mpul0
|
782
|
4
|
4
|
|
Ureaplasma
urealyticum
|
uure0
|
611
|
3
|
3
|
|
|
|
|
|
|
Fusobacteria
|
|
Fusobacterium
nucleatum ATCC 25586
|
fnuc0
|
2067
|
44
|
20
|
|
|
|
|
|
|
Planctomycetes
|
|
Pirellula
sp. 1
|
rbal0
|
7325
|
91
|
20
|
|
|
|
|
|
|
Proteobacteria /
Alpha-proteobacteria
|
|
Caulobacter
crescentus
|
ccre0
|
3737
|
167
|
29
|
|
Bradyrhizobium
japonicum
|
bjap0
|
8317
|
453 |
35
|
|
Rhodopseudomonas
palustris
|
rpal0
|
4814
|
227
|
32
|
|
Brucella
melitensis 16M
|
bmel0
|
3198
|
168
|
30
|
|
Brucella
suis
1330
|
bsui0
|
3264 |
159
|
29
|
|
Mesorhizobium
loti MAFF303099
|
mlot0
|
7281
|
475
|
33
|
|
Agrobacterium
tumefaciens C58
|
atum0
|
5301
|
375
|
29
|
|
Agrobacterium
tumefaciens C58 (Dupont)
|
atum1
|
5402
|
387
|
29
|
|
Sinorhizobium
meliloti 1021
|
smel0
|
6205
|
434
|
33
|
|
Rickettsia
conorii Malish 7
|
rcon0
|
1374
|
11
|
6
|
|
Rickettsia
prowazekii Madrid E
|
rpro0
|
834
|
9
|
6
|
|
|
|
|
|
|
Proteobacteria /
Beta-proteobacteria
|
|
Bordetella
bronchiseptica RB50
|
bbro0
|
4994
|
409
|
30
|
|
Bordetella
parapertussis
|
bpar0
|
4185
|
339
|
30
|
|
Bordetella
pertussis Tohama I
|
bper0
|
3447 |
245
|
30
|
|
Ralstonia
solanacearum GMI1000
|
rsol0
|
5116
|
315
|
33
|
|
Chromobacterium
violaceum ATCC 12472
|
cvio0
|
4385
|
223
|
28
|
|
Neisseria
meningitidis MC58
|
nmen0
|
2025
|
41
|
20
|
|
Neisseria
meningitidis Z2491
|
nmen1
|
2065
|
42
|
21
|
|
Nitrosomonas
europaea ATCC 19718
|
neur0
|
2461
|
46
|
18
|
|
|
|
|
|
|
Proteobacteria /
Delta-proteobacteria
|
|
Bdellovibrio
bacteriovorus HD100
|
bbac0
|
3583
|
86
|
19
|
|
Geobacter
sulfurreducens PCA
|
gsul0
|
3445
|
101
|
22
|
|
|
|
|
|
|
Proteobacteria /
Epsilon-proteobacteria
|
|
Campylobacter
jejuni
|
cjej0
|
1634
|
20
|
13
|
|
Helicobacter
hepaticus ATCC 51449
|
hhep0
|
1875
|
17
|
10
|
|
Helicobacter
pylori 26695
|
hpyl0
|
1566
|
6
|
4
|
|
Helicobacter
pylori J99
|
hpyl1
|
1491
|
7
|
4
|
|
Wolinella
succinogenes DSMZ 1740
|
wsuc0
|
2044
|
54
|
16
|
|
|
|
|
|
|
Proteobacteria /
Gamma-proteobacteria
|
|
Shewanella
oneidensis MR-1
|
sone0
|
4778
|
183
|
34
|
|
Buchnera
aphidicola Sg
|
baph0
|
552
|
5
|
4
|
|
Buchnera
aphidicola (Baizongia pistaciae)
|
baph1
|
507
|
3
|
2
|
|
Buchnera
sp. APS
|
buch0
|
574
|
4
|
3
|
|
Escherichia
coli
K-12 MG1655
|
ecol0
|
4285
|
252
|
48
|
|
Escherichia
coli
O157:H7
|
ecol1
|
5447
|
260
|
47
|
|
Escherichia
coli
O157:H7 EDL933
|
ecol2
|
5449
|
259
|
47
|
|
Escherichia
coli
CFT073
|
ecol3
|
5379
|
262
|
47
|
|
Photorhabdus
luminescens laumondii TTO1 |
plum0
|
4683 |
225
|
36
|
|
Salmonella
Typhi
CT18
|
styp0
|
4767
|
257
|
46
|
|
Salmonella
typhimurium LT2
|
styp1
|
4554
|
274
|
48
|
|
Salmonella
enterica subsp. enterica serovar Typhi Ty2
|
styp2
|
4323
|
250
|
46
|
|
Shigella
flexneri 2a 301
|
sfle0
|
4452
|
197
|
42
|
|
Shigella
flexneri 2a str. 2457T
|
sfle1
|
4068
|
196
|
43
|
|
Wigglesworthia
brevipalpis
|
wbre0
|
611
|
6
|
5
|
|
Yersinia
pestis
CO92
|
ypes0
|
4083
|
183
|
40
|
|
Yersinia
pestis
KIM
|
ypes1
|
4281
|
183
|
40
|
|
Yersinia
pestis
biovar Mediaevails str. 91001
|
ypes2
|
4142
|
187
|
40
|
|
Candidatus
Blochmannia floridanus
|
bflo0
|
583
|
5
|
4
|
|
Coxiella
burnetii RSA 493
|
cbur0
|
2045
|
27
|
16
|
|
Haemophilus
ducreyi 35000HP
|
hduc0
|
1717
|
36
|
21
|
|
Haemophilus
influenzae Rd
|
hinf0
|
1709
|
53
|
28
|
|
Pasteurella
multocida PM70
|
pmul0
|
2014
|
67
|
33
|
|
Pseudomonas
aeruginosa PAO1
|
paer0
|
5566
|
417
|
33
|
|
Pseudomonas
putida KT2440
|
pput0
|
5350
|
370
|
32
|
|
Pseudomonas
syringae pv. tomato str. DC3000
|
psyr0
|
5608
|
303
|
33
|
|
Vibrio
cholerae
N16961
|
vcho0
|
3828
|
185
|
38
|
|
Vibrio
parahaemolyticus RIMD 2210633
|
vpar0
|
4832
|
273
|
40
|
|
Vibrio
vulnificus CMCP6
|
vvul0
|
4537
|
249
|
40
|
|
Vibrio
vulnificus YJ016
|
vvul1
|
5028
|
257
|
40
|
|
Xanthomonas
axonopodis pv. citri 306
|
xaxo0
|
4427
|
171
|
33
|
|
Xanthomonas
campestris pv. campestris ATCC 33913
|
xcam0
|
4181
|
166
|
31
|
|
Xylella
fastidiosa 9a5c
|
xfas0
|
2832
|
52
|
22
|
|
Xylella
fastidiosa Temecula1
|
xfas1
|
2036
|
40
|
21
|
|
|
|
|
|
|
Spirochaetes
|
|
Leptospira
interrogans serovar lai str. 56601
|
lint0
|
4725
|
60
|
17
|
|
Leptospira
interrogans serovar Copenhageni
|
lint1
|
3660
|
60
|
17
|
|
Borrelia
burgdorferi
|
bbur0
|
1639
|
3
|
3
|
|
Treponema
pallidum
|
tpal0
|
1031
|
7
|
5
|
|
|
|
|
|
|
Thermotogae
|
|
Thermotoga
maritima
|
tmar0
|
1846
|
46
|
23
|
